ViewGene
Locus Name:
GeneID:
Location:

GeneID:3791
TrivialName: PA14_12840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12840
PAO1 Ortholog Locus:PA3945
Sequence Length:591
Protein Length:196
Start: 1102008
Stop: 1102598
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07332.1|AE004812_7 (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/196 (99%), Positives = 195/196 (99%)
Sequence:
ATGGCCGACCTGACCAGCCTGAGCATCGAGCATCTGCGCTCGCCACGGCTGTATACCCACCGTCTGATCCTG
CGGCCCTGGCTGGTGCAGGACCGAGCCAGGTTCGCCGAGCTGAATGCCGACCCGCGGGTGATGGAGTTCTTT
CCGTCCTGCCTGGATCGCGCCCAGAGCGACGCGTTGCTGCGCCGCATCGACGCGCACTTCGCCGAGCACGGT
TTTGGCTGGTGGGCGCTGCAGGTCAAGGGCGGCGATCCTTTCATCGGCTACGTGGGGCTGGAGGTCGTGGAC
TTCGATGCGCCCTTCGTACCCGCGGTGGCCATCGGCTGGCGTCTCGCCGCCGAGCATTGGGCGGAGGGCTTC
GCCCACGAGGCGGCCGAGGCGGCGCTGAGCTACGCCTTCGATACCCTTGGCCTGGACCAGGTGGTGGCTTTC
ACCGTACCGGCCAACGAGAACTCCCTGGGACTGATGGAGCGCCTGGGGATGCATCGCGATCCCACCGACGAC
TTCGAGCATCCCGACCTGCCCCCCGGCCACCGCTTGCGGCATCATGTGCTGTACCGGTTGACGCGCGAGGAC
TGGCTTCGCAGATGA
Translation:
MADLTSLSIEHLRSPRLYTHRLILRPWLVQDRARFAELNADPRVMEFFPSCLDRAQSDALLRRIDAHFAEHG
FGWWALQVKGGDPFIGYVGLEVVDFDAPFVPAVAIGWRLAAEHWAEGFAHEAAEAALSYAFDTLGLDQVVAF
TVPANENSLGLMERLGMHRDPTDDFEHPDLPPGHRLRHHVLYRLTREDWLRR*
AnnotationID:3798GeneID:3791
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 12:12:05
Gene Name:
Confidence Code:3
GeneProduct:possible acetyltransferase, GNAT family
Cell Localization:()
Synonyms:PA3945
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1670
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11381 COG1670, RimL, Acetyltransferases, including N-acetylases of
ribosomal proteins
[Translation, ribosomal structure and biogenesis]
Length = 187
Score = 98.9 bits (245), Expect = 8e-22
Identities = 62/189 (32%), Positives = 89/189 (47%),






   
Genomic Context:






   
Comment:


















    ReferenceID:7585




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24727




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3791
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6011
                           PA3945_tr
                           translation of PA3945
                           196
                           99.48
                           99.48
                           0
                           1049.0
     

     
     
167605
                           gb|AAG07332.1|AE004812_7
                           (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           196
                           99.48
                           99.48
                           0
                           1049.0
     

     
     
6012
                           PA3944_tr
                           translation of PA3944
                           197
                           54.31
                           64.46
                           6
                           540.0
     

     
     
167606
                           gb|AAG07331.1|AE004812_6
                           (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           197
                           54.31
                           64.46
                           6
                           540.0
     

     
     
167607
                           gb|AAO58107.1|
                           (AE016872) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           201
                           47.26
                           61.19
                           17
                           491.0
     

     






      

          
GC ORFID: 46793How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3945Glimmer Score: 

          
Start: 3851930Stop: 3851340

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3945 translation of PA3945Homolog Bit Score 408.0

          
Other Homologs:  t_PA3944 (ORF: BLASTX 211.0), psyr_15may02_Scaffold4_revised_gene5384 (ORF: BLASTX 186.0), t_PA3945 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGACCTGACCAGCCTGAGCATCGAGCATCTGCGCTCGCCACGGCTGTATACCCACCGTCTGATCCTG 
CGGCCCTGGCTGGTGCAGGACCGAGCCAGGTTCGCCGAGCTGAATGCCGACCCGCGGGTGATGGAGTTCTTT 
CCGTCCTGCCTGGATCGCGCCCAGAGCGACGCGTTGCTGCGCCGCATCGACGCGCACTTCGCCGAGCACGGT 
TTTGGCTGGTGGGCGCTGCAGGTCAAGGGCGGCGATCCTTTCATCGGCTACGTGGGGCTGGAGGTCGTGGAC 
TTCGATGCGCCCTTCGTACCCGCGGTGGCCATCGGCTGGCGTCTCGCCGCCGAGCATTGGGCGGAGGGCTTC 
GCCCACGAGGCGGCCGAGGCGGCGCTGAGCTACGCCTTCGATACCCTTGGCCTGGACCAGGTGGTGGCTTTC 
ACCGTACCGGCCAACGAGAACTCCCTGGGACTGATGGAGCGCCTGGGGATGCATCGCGATCCCACCGACGAC 
TTCGAGCATCCCGACCTGCCCCCCGGCCACCGCTTGCGGCATCATGTGCTGTACCGGTTGACGCGCGAGGAC 
TGGCTTCGCAGATGA