ViewGene
Locus Name:
GeneID:
Location:

GeneID:3790
TrivialName: PA14_20690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20690
PAO1 Ortholog Locus:PA3354
Sequence Length:612
Protein Length:203
Start: 1782148
Stop: 1782759
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06742.1|AE004757_11 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 201/203 (99%), Positives = 203/203 (100%)
Sequence:
ATGAGTCCGACGCTTTCCCTTCACCTGATGGTGCGCAACCTGCCGCCCGGGCAGCGGCGGCCGAAGATCGCC
CAGGCCATCGGCGAGGAGAGCGCGGGACGCTTGCAGCGGGTATTGCTGGAACGCGCCCTGCGCCTGCCCGAT
CGCGGTTTCAGTGCCCGCATCCTCTGGTTCGACGACGATCTGGACAGCGATCTGCAGGCGCTGGCGGTGGCG
TTGGGCTGGAGCCTGATGAGCCAGCCGGCCGGCGATCCCGGCGAGCGCATGCGGCGTATCGCGGCGCTAGGG
TTGGCGGAAAGCGAGGCGGTACTGCTGATTCGGCACGACTGCCCGGTGCTGGACGGCGACTACCTGGAAGCG
GCCTGCACCGCCCTGGGCCGCCACCAGGCGGTGCTGGGGCCGGTGGAGCGGGGCGGCTACGCGCTGCTCGGC
CTGACCCGGGTCGACCCGCTGTTGTTCGAAGCGATGCCCTGGGGCGGAGACCGCCTGCTGGCGCTGACCTGC
GAGCGTCTCCGGCAACTGGGCTGGGAGCATCACCTGCTGCCGGCGCTCTGGGACGTCGACCGTCCCGAGGAC
CTGCCGCGCCTGGCGGCGCTGGGAGTGGTCCTGTGA
Translation:
MSPTLSLHLMVRNLPPGQRRPKIAQAIGEESAGRLQRVLLERALRLPDRGFSARILWFDDDLDSDLQALAVA
LGWSLMSQPAGDPGERMRRIAALGLAESEAVLLIRHDCPVLDGDYLEAACTALGRHQAVLGPVERGGYALLG
LTRVDPLLFEAMPWGGDRLLALTCERLRQLGWEHHLLPALWDVDRPEDLPRLAALGVVL*
AnnotationID:3797GeneID:3790
AnnotatorUID: diggins
Modification Date/Time: 2005-04-17 17:05:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3354
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7583




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24725




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32200




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3790_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3790
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6010
                           PA3354_tr
                           translation of PA3354
                           203
                           99.01
                           99.99
                           0
                           1048.0
     

     
     
167604
                           gb|AAG06742.1|AE004757_11
                           (AE004757) hypothetical protein PA3354 [Pseudomonas aeruginosa PAO1]
                           203
                           99.01
                           99.99
                           0
                           1048.0
     

     






      

          
GC ORFID: 46792How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3354Glimmer Score: 

          
Start: 3171784Stop: 3171173

          
Length: 612


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3354 translation of PA3354Homolog Bit Score 408.0

          
Other Homologs:  t_PA3354 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCCGACGCTTTCCCTTCACCTGATGGTGCGCAACCTGCCGCCCGGGCAGCGGCGGCCGAAGATCGCC 
CAGGCCATCGGCGAGGAGAGCGCGGGACGCTTGCAGCGGGTATTGCTGGAACGCGCCCTGCGCCTGCCCGAT 
CGCGGTTTCAGTGCCCGCATCCTCTGGTTCGACGACGATCTGGACAGCGATCTGCAGGCGCTGGCGGTGGCG 
TTGGGCTGGAGCCTGATGAGCCAGCCGGCCGGCGATCCCGGCGAGCGCATGCGGCGTATCGCGGCGCTAGGG 
TTGGCGGAAAGCGAGGCGGTACTGCTGATTCGGCACGACTGCCCGGTGCTGGACGGCGACTACCTGGAAGCG 
GCCTGCACCGCCCTGGGCCGCCACCAGGCGGTGCTGGGGCCGGTGGAGCGGGGCGGCTACGCGCTGCTCGGC 
CTGACCCGGGTCGACCCGCTGTTGTTCGAAGCGATGCCCTGGGGCGGAGACCGCCTGCTGGCGCTGACCTGC 
GAGCGTCTCCGGCAACTGGGCTGGGAGCATCACCTGCTGCCGGCGCTCTGGGACGTCGACCGTCCCGAGGAC 
CTGCCGCGCCTGGCGGCGCTGGGAGTGGTCCTGTGA