ViewGene
Locus Name:
GeneID:
Location:

GeneID:3788
TrivialName: PA14_32910
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32910
PAO1 Ortholog Locus:PA2451
Sequence Length:600
Protein Length:199
Start: 2879330
Stop: 2879929
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by PA14_32905 (GeneID 7396). Homology: gb|AAG05839.1|AE004672_7 (AE004672) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/199 (99%), Positives = 198/199 (99%)
Sequence:
GTGCTGTTCGACGAGGACCACTACGCGCGCGACGTACCGACCCCGACCATCCTCGACAACCTGATCGCCGCC
GGGCGTATCCGCCCGACCCTGGCGGTGATTGTCGGCAATGTCGACGCCAGCAGCCGGGGCCGCGAGCTGCCC
TGCAACGAGGCCTTCGCCGACATGCTCGCCCACGAGCTGCTGCCCTGGTTGCAGCAGCGCTATGCATTGAGC
GAGGAGCCTGCCGATCGCGTGCTTTCCGGTTCCAGCTACGGCGGGCTGGCCTCGGGCTGCATCGCCTACCGT
TACCCGGAACGCTTCGGCAAGGTGCTGAGCCTGTCCGGCTCGTTCTGGTGGGGGCCGGACGAGCAGCAGCCG
CAGTGGCTGGTACGGCAGTTCGCCGCTGGCGAGCGTTTGCCGCTGGCGTTCTTCCTCAGTTCCGGCCTGCTC
GAGGAGCCCGAGGCGGACGGCATTCTCGGCAGCAACCGCAGCCTGCGCGCGGCGCTGCAAGGCAAGGGCTAC
CCGCTGCACTACCGCGAGTTCCCCGGCGGTCACGACTACGCGGCGTGGAGCCTGGAGCTTGCCGAAGGGTTG
CAGGCCTTGTTGCCGGCGCATTGA
Translation:
MLFDEDHYARDVPTPTILDNLIAAGRIRPTLAVIVGNVDASSRGRELPCNEAFADMLAHELLPWLQQRYALS
EEPADRVLSGSSYGGLASGCIAYRYPERFGKVLSLSGSFWWGPDEQQPQWLVRQFAAGERLPLAFFLSSGLL
EEPEADGILGSNRSLRAALQGKGYPLHYREFPGGHDYAAWSLELAEGLQALLPAH*
AnnotationID:3795GeneID:3788
AnnotatorUID: danlee
Modification Date/Time: 2006-02-09 17:05:36
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
PA14_32910 (GeneID 3788) replaced by  PA14_32905 (GeneID 7396).



















    ReferenceID:14921




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3788
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6008
                           PA2451_tr
                           translation of PA2451
                           199
                           99.49
                           99.49
                           0
                           1048.0
     

     
     
167587
                           gb|AAG05839.1|AE004672_7
                           (AE004672) hypothetical protein PA2451 [Pseudomonas aeruginosa PAO1]
                           199
                           98.99
                           99.49
                           0
                           1045.0
     

     
     
167589
                           emb|CAD77124.1|
                           (BX294152) enterochelin esterase [Pirellula sp.] [Pirellula sp. 1]
                           551
                           16.51
                           21.77
                           355
                           434.0
     

     
     
167588
                           emb|CAE16629.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           544
                           15.80
                           22.97
                           347
                           433.0
     

     






      

          
GC ORFID: 46790How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2451Glimmer Score: 

          
Start: 2074594Stop: 2073995

          
Length: 600


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2451 translation of PA2451Homolog Bit Score 408.0

          
Other Homologs:  t_PA2452 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTGTTCGACGAGGACCACTACGCGCGCGACGTACCGACCCCGACCATCCTCGACAACCTGATCGCCGCC 
GGGCGTATCCGCCCGACCCTGGCGGTGATTGTCGGCAATGTCGACGCCAGCAGCCGGGGCCGCGAGCTGCCC 
TGCAACGAGGCCTTCGCCGACATGCTCGCCCACGAGCTGCTGCCCTGGTTGCAGCAGCGCTATGCATTGAGC 
GAGGAGCCTGCCGATCGCGTGCTTTCCGGTTCCAGCTACGGCGGGCTGGCCTCGGGCTGCATCGCCTACCGT 
TACCCGGAACGCTTCGGCAAGGTGCTGAGCCTGTCCGGCTCGTTCTGGTGGGGGCCGGACGAGCAGCAGCCG 
CAGTGGCTGGTACGGCAGTTCGCCGCTGGCGAGCGTTTGCCGCTGGCGTTCTTCCTCAGTTCCGGCCTGCTC 
GAGGAGCCCGAGGCGGACGGCATTCTCGGCAGCAACCGCAGCCTGCGCGCGGCGCTGCAAGGCAAGGGCTAC 
CCGCTGCACTACCGCGAGTTCCCCGGCGGTCACGACTACGCGGCGTGGAGCCTGGAGCTTGCCGAAGGGTTG 
CAGGCCTTGTTGCCGGCGCATTGA