ViewGene

Locus Name:
GeneID:
Location:

GeneID:3763
TrivialName: PA14_51490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51490
PAO1 Ortholog Locus:PA0990
Sequence Length:639
Protein Length:212
Start: 4578053
Stop: 4578691
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04379.1|AE004532_3 (AE004532) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/212 (97%), Positives = 206/212 (97%)
Sequence:
GTGCCATCGGTCAGCGATCCCAGGGCGCTTGCCCATCTTCTGGAATTGATACTGTCCACCGCCCAGGCCGGT
CTCGCCTTTTCCAAGGACCGCTTCGACATCGGACGCTTTCGCGCGCTCCAGCATGCCGTCGCCGAATTCATC
GCCAGCGACCAGGGGGTAGCGTACGAACGGGTCGAGAACTGGATCGCCCTGGACAGCCACTACCCGACCCCG
AAACTGGACGTCCGTGCGTTGATCCTCGACTCGCAACAGCGGGTCCTGCTGGTCCGCGAGGCCTCGGATGGT
CGCTGGACCCTACCGGGCGGCTGGTGCGACGTAAACGAGTCGCCGGCAGATGCGGTAGTTCGCGAAACCCAG
GAAGAGAGCGGACTGGAAGTCCGAGCGATACGCCTGTTGGCATTGCTGGACAAGCACAAGCATCCCCACCCT
CCCCAACTGCCGCATGCGTTGAAAGCTTTCTTCTTCTGCCACGTCACCGGTGGCAGGCTTCAGCAACAAACG
GACGAAACGTCGGCGGCCGAGTACTTTCCGGTGGACGCCTTGCCGCCGCTTTCCGAGCACCGGGTACTGGCC
TCGCAGATCCAGACGTTATGGCAGCGAATCCGCGCAGGAACGCCAGAGGCGCTTTTCGACTAG
Translation:
MPSVSDPRALAHLLELILSTAQAGLAFSKDRFDIGRFRALQHAVAEFIASDQGVAYERVENWIALDSHYPTP
KLDVRALILDSQQRVLLVREASDGRWTLPGGWCDVNESPADAVVRETQEESGLEVRAIRLLALLDKHKHPHP
PQLPHALKAFFFCHVTGGRLQQQTDETSAAEYFPVDALPPLSEHRVLASQIQTLWQRIRAGTPEALFD*
AnnotationID:3770GeneID:3763
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 15:03:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0990
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1051, pfam00293
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1051, ADP-ribose pyrophosphatase. Score: 101, 7e-23
pfam00293, NUDIX, NUDIX domain.  Score: 76.4, 2e-15
Genomic Context:
Comment:
ReferenceID:14917
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24671
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3763

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5979 PA0990_tr translation of PA0990 212 96.69 97.16 0 1056.0
167355 gb|AAG04379.1|AE004532_3 (AE004532) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 212 96.69 97.16 0 1056.0
167356 gb|AAP82963.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa] 212 76.88 76.88 45 864.0
167357 dbj|BAB06808.1| (AP001517) mutator MutT protein [Bacillus halodurans] 215 38.60 58.13 11 375.0
167358 gb|AAN59080.1|AE014974_10 (AE014974) putative mutator protein MutT [Streptococcus mutans UA159] 212 35.84 56.60 7 352.0
GC ORFID: 46765How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0990Glimmer Score:
Start: 375854Stop: 375216
Length: 639
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0990 translation of PA0990Homolog Bit Score 411.0
Other Homologs: t_PA0990 (ORF: GLIMMER)
GC ORF Sequence
GTGCCATCGGTCAGCGATCCCAGGGCGCTTGCCCATCTTCTGGAATTGATACTGTCCACCGCCCAGGCCGGT
CTCGCCTTTTCCAAGGACCGCTTCGACATCGGACGCTTTCGCGCGCTCCAGCATGCCGTCGCCGAATTCATC
GCCAGCGACCAGGGGGTAGCGTACGAACGGGTCGAGAACTGGATCGCCCTGGACAGCCACTACCCGACCCCG
AAACTGGACGTCCGTGCGTTGATCCTCGACTCGCAACAGCGGGTCCTGCTGGTCCGCGAGGCCTCGGATGGT
CGCTGGACCCTACCGGGCGGCTGGTGCGACGTAAACGAGTCGCCGGCAGATGCGGTAGTTCGCGAAACCCAG
GAAGAGAGCGGACTGGAAGTCCGAGCGATACGCCTGTTGGCATTGCTGGACAAGCACAAGCATCCCCACCCT
CCCCAACTGCCGCATGCGTTGAAAGCTTTCTTCTTCTGCCACGTCACCGGTGGCAGGCTTCAGCAACAAACG
GACGAAACGTCGGCGGCCGAGTACTTTCCGGTGGACGCCTTGCCGCCGCTTTCCGAGCACCGGGTACTGGCC
TCGCAGATCCAGACGTTATGGCAGCGAATCCGCGCAGGAACGCCAGAGGCGCTTTTCGACTAG