ViewGene
Locus Name:
GeneID:
Location:

GeneID:3763
TrivialName: PA14_51490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51490
PAO1 Ortholog Locus:PA0990
Sequence Length:639
Protein Length:212
Start: 4578053
Stop: 4578691
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04379.1|AE004532_3 (AE004532) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/212 (97%), Positives = 206/212 (97%)
Sequence:
GTGCCATCGGTCAGCGATCCCAGGGCGCTTGCCCATCTTCTGGAATTGATACTGTCCACCGCCCAGGCCGGT
CTCGCCTTTTCCAAGGACCGCTTCGACATCGGACGCTTTCGCGCGCTCCAGCATGCCGTCGCCGAATTCATC
GCCAGCGACCAGGGGGTAGCGTACGAACGGGTCGAGAACTGGATCGCCCTGGACAGCCACTACCCGACCCCG
AAACTGGACGTCCGTGCGTTGATCCTCGACTCGCAACAGCGGGTCCTGCTGGTCCGCGAGGCCTCGGATGGT
CGCTGGACCCTACCGGGCGGCTGGTGCGACGTAAACGAGTCGCCGGCAGATGCGGTAGTTCGCGAAACCCAG
GAAGAGAGCGGACTGGAAGTCCGAGCGATACGCCTGTTGGCATTGCTGGACAAGCACAAGCATCCCCACCCT
CCCCAACTGCCGCATGCGTTGAAAGCTTTCTTCTTCTGCCACGTCACCGGTGGCAGGCTTCAGCAACAAACG
GACGAAACGTCGGCGGCCGAGTACTTTCCGGTGGACGCCTTGCCGCCGCTTTCCGAGCACCGGGTACTGGCC
TCGCAGATCCAGACGTTATGGCAGCGAATCCGCGCAGGAACGCCAGAGGCGCTTTTCGACTAG
Translation:
MPSVSDPRALAHLLELILSTAQAGLAFSKDRFDIGRFRALQHAVAEFIASDQGVAYERVENWIALDSHYPTP
KLDVRALILDSQQRVLLVREASDGRWTLPGGWCDVNESPADAVVRETQEESGLEVRAIRLLALLDKHKHPHP
PQLPHALKAFFFCHVTGGRLQQQTDETSAAEYFPVDALPPLSEHRVLASQIQTLWQRIRAGTPEALFD*
AnnotationID:3770GeneID:3763
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 15:03:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0990
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1051, pfam00293
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1051, ADP-ribose pyrophosphatase. Score: 101, 7e-23
pfam00293, NUDIX, NUDIX domain.  Score: 76.4, 2e-15






   
Genomic Context:






   
Comment:


















    ReferenceID:14917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24671




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3763
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5979
                           PA0990_tr
                           translation of PA0990
                           212
                           96.69
                           97.16
                           0
                           1056.0
     

     
     
167355
                           gb|AAG04379.1|AE004532_3
                           (AE004532) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           212
                           96.69
                           97.16
                           0
                           1056.0
     

     
     
167356
                           gb|AAP82963.1|
                           (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
                           212
                           76.88
                           76.88
                           45
                           864.0
     

     
     
167357
                           dbj|BAB06808.1|
                           (AP001517) mutator MutT protein [Bacillus halodurans]
                           215
                           38.60
                           58.13
                           11
                           375.0
     

     
     
167358
                           gb|AAN59080.1|AE014974_10
                           (AE014974) putative mutator protein MutT [Streptococcus mutans UA159]
                           212
                           35.84
                           56.60
                           7
                           352.0
     

     






      

          
GC ORFID: 46765How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0990Glimmer Score: 

          
Start: 375854Stop: 375216

          
Length: 639


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0990 translation of PA0990Homolog Bit Score 411.0

          
Other Homologs:  t_PA0990 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCATCGGTCAGCGATCCCAGGGCGCTTGCCCATCTTCTGGAATTGATACTGTCCACCGCCCAGGCCGGT 
CTCGCCTTTTCCAAGGACCGCTTCGACATCGGACGCTTTCGCGCGCTCCAGCATGCCGTCGCCGAATTCATC 
GCCAGCGACCAGGGGGTAGCGTACGAACGGGTCGAGAACTGGATCGCCCTGGACAGCCACTACCCGACCCCG 
AAACTGGACGTCCGTGCGTTGATCCTCGACTCGCAACAGCGGGTCCTGCTGGTCCGCGAGGCCTCGGATGGT 
CGCTGGACCCTACCGGGCGGCTGGTGCGACGTAAACGAGTCGCCGGCAGATGCGGTAGTTCGCGAAACCCAG 
GAAGAGAGCGGACTGGAAGTCCGAGCGATACGCCTGTTGGCATTGCTGGACAAGCACAAGCATCCCCACCCT 
CCCCAACTGCCGCATGCGTTGAAAGCTTTCTTCTTCTGCCACGTCACCGGTGGCAGGCTTCAGCAACAAACG 
GACGAAACGTCGGCGGCCGAGTACTTTCCGGTGGACGCCTTGCCGCCGCTTTCCGAGCACCGGGTACTGGCC 
TCGCAGATCCAGACGTTATGGCAGCGAATCCGCGCAGGAACGCCAGAGGCGCTTTTCGACTAG