ViewGene
Locus Name:
GeneID:
Location:

GeneID:3708
TrivialName: PA14_50880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50880
PAO1 Ortholog Locus:PA1041
Sequence Length:633
Protein Length:210
Start: 4522961
Stop: 4522329
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04430.1|AE004536_9 (AE004536) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 210/210 (100%), Positives = 210/210 (100%)
Sequence:
ATGAGCATCACGAGGACCGCTTTACCCCTGATTCTGGTCAGCGGCTTGCTGACCGGTTGCGCAGGGTTGCAG
AAAAGCGACTGGCCGACCTGTGCGGCGGTCGGTGGTGTTACCGGCGCCGGCCTGGGCGCGATCGAAAGCAGC
AGCTGGGCCGGCTGGGGCGCCCTGATCGGCGGTGGCGTCGGTGCCGCCTATTGCTGGGTGCACGGTGCCGGC
GAACAGGTCGCGCCGCCGCCTCCGCAGCCGGTCGAGGAAGTCGCGCCGCCGCCTCCTGTCGTCAAGGAAGAA
ACCATTGTCGTGCGCGACCTGCACTTCGCCTTCGATTCGTCGAAGGTGGACGCCGCCGACAGCGAGAAGCTC
AACGGCATCGCCGAACGCCTGAAAGGCGAGGCGGCCAGTACGCGCCTGAGTATCACCGGGCATACCGACAGC
GTCGGTTCCGATGCCTACAACCAGAAGCTGTCGGAACGGCGCGCGAATGCCGTGGCGAACTATCTGATCGAT
GCCGGGGTGCCTTCGAGCATCATCGTCGGCGTGCAGGGATTGGGCGAAAGCCAGCCGGTCGCCGACAACAAG
ACTCGCGAAGGGCGGGCCGAGAATCGCCGGGTGGAAATCCTCATCAAGCGCGAATGA
Translation:
MSITRTALPLILVSGLLTGCAGLQKSDWPTCAAVGGVTGAGLGAIESSSWAGWGALIGGGVGAAYCWVHGAG
EQVAPPPPQPVEEVAPPPPVVKEETIVVRDLHFAFDSSKVDAADSEKLNGIAERLKGEAASTRLSITGHTDS
VGSDAYNQKLSERRANAVANYLIDAGVPSSIIVGVQGLGESQPVADNKTREGRAENRRVEILIKRE*
AnnotationID:3716GeneID:3708
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 11:11:58
Gene Name:
Confidence Code:3
GeneProduct:probable outer membrane protein precursor
Cell Localization:()
Synonyms:PA1041
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2885, pfam00691
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
[Cell envelope biogenesis, outer membrane]
       CD-Length = 190 residues,  94.2% aligned
       Score =  150 bits (380), Expect = 9e-38
pfam00691, OmpA, OmpA






   
Genomic Context:






   
Comment:


















    ReferenceID:7419




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24561




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3708
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5916
                           PA1041_tr
                           translation of PA1041
                           210
                           99.99
                           99.99
                           0
                           1078.0
     

     
     
165661
                           gb|AAG04430.1|AE004536_9
                           (AE004536) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           210
                           99.99
                           99.99
                           0
                           1078.0
     

     
     
165662
                           gb|AAN66746.1|AE016303_1
                           (AE016778) OmpA family protein [Pseudomonas putida KT2440]
                           231
                           61.03
                           73.59
                           22
                           717.0
     

     
     
165663
                           gb|AAN66747.1|AE016303_2
                           (AE016778) OmpA family protein [Pseudomonas putida KT2440]
                           268
                           36.94
                           50.37
                           62
                           433.0
     

     
     
165678
                           gb|AAL94132.1|
                           (AE010508) Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
                           240
                           25.83
                           35.00
                           119
                           245.0
     

     






      

          
GC ORFID: 46710How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1041Glimmer Score: 

          
Start: 430947Stop: 431579

          
Length: 633


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1041 translation of PA1041Homolog Bit Score 419.0

          
Other Homologs:  t_PA1041 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCACGAGGACCGCTTTACCCCTGATTCTGGTCAGCGGCTTGCTGACCGGTTGCGCAGGGTTGCAG 
AAAAGCGACTGGCCGACCTGTGCGGCGGTCGGTGGTGTTACCGGCGCCGGCCTGGGCGCGATCGAAAGCAGC 
AGCTGGGCCGGCTGGGGCGCCCTGATCGGCGGTGGCGTCGGTGCCGCCTATTGCTGGGTGCACGGTGCCGGC 
GAACAGGTCGCGCCGCCGCCTCCGCAGCCGGTCGAGGAAGTCGCGCCGCCGCCTCCTGTCGTCAAGGAAGAA 
ACCATTGTCGTGCGCGACCTGCACTTCGCCTTCGATTCGTCGAAGGTGGACGCCGCCGACAGCGAGAAGCTC 
AACGGCATCGCCGAACGCCTGAAAGGCGAGGCGGCCAGTACGCGCCTGAGTATCACCGGGCATACCGACAGC 
GTCGGTTCCGATGCCTACAACCAGAAGCTGTCGGAACGGCGCGCGAATGCCGTGGCGAACTATCTGATCGAT 
GCCGGGGTGCCTTCGAGCATCATCGTCGGCGTGCAGGGATTGGGCGAAAGCCAGCCGGTCGCCGACAACAAG 
ACTCGCGAAGGGCGGGCCGAGAATCGCCGGGTGGAAATCCTCATCAAGCGCGAATGA