ViewGene
Locus Name:
GeneID:
Location:

GeneID:3699
TrivialName: PA14_63320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63320
PAO1 Ortholog Locus:PA4791
Sequence Length:621
Protein Length:206
Start: 5650642
Stop: 5651262
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08177.1|AE004892_8 (AE004892) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 203/206 (98%), Positives = 203/206 (98%)
Sequence:
ATGCAATCGCGACTGTTGATCCTGCCGTTACTCGCCAGCCTGGCCGCCCTCGGCGCCTGCCAGGGCGACAAT
CCCTACCGCGCCAGCTCCCTGCCCTACCCGCCGCAGCCGGCCGCCGCGGCCAATCCCGGCCTCGATCCCGGC
ACCTACCCGGCGGCGCCGCGCGACTACGCCCGCTACCGTAGCTGGAGCTGGGCCGCCGCCGGGGTCAGCGGC
TTTCCCCAGGGCCTGGACGACAACCAGTTGCGCGACGCCGTCAGCCAGCAGCTCGACCAGCGCGGCCTGCGC
CCGGCGCGGCCGGGCAGCGCGGCCGACCTGCAGGTCAGCGCGTTCCTGCGCAACGAACTGCGCACCCGCCAG
GTCACCGACTACTACGGCGGCTACTACGGCAACTACGGCGGCTGGCGCGATCCCTGGTACGGCTATGGCGCC
AGCTACCCGGTGACCCGCAGCTACACCGTGCAGGTCACCGTGGTCCGCGTCGAGCTGAACGACGCCCGCAGC
GGCCAGCCGGTGTGGGGCAACAGCGCCGAGTTCGACTCCGGCGACTCCGTCAGCGAACAGGCCAAGGCCCTG
CGCGAAGCGGTGAAACGGGCGCTGTCGAGCTACCCGCCGGGCTGA
Translation:
MQSRLLILPLLASLAALGACQGDNPYRASSLPYPPQPAAAANPGLDPGTYPAAPRDYARYRSWSWAAAGVSG
FPQGLDDNQLRDAVSQQLDQRGLRPARPGSAADLQVSAFLRNELRTRQVTDYYGGYYGNYGGWRDPWYGYGA
SYPVTRSYTVQVTVVRVELNDARSGQPVWGNSAEFDSGDSVSEQAKALREAVKRALSSYPPG*
AnnotationID:3707GeneID:3699
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 08:08:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4791
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54281.1| (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 212

 Score =  184 bits (467), Expect = 3e-46
 Identities = 103/205 (50%), Positives = 131/205 (63%), Gaps = 8/205 (3%)

>gb|AAN66203.1|AE016248_6 (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 189

 Score =  112 bits (279), Expect = 2e-24
 Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 17/165 (10%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7401




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24543




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3699
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5904
                           PA4791_tr
                           translation of PA4791
                           206
                           98.54
                           98.54
                           0
                           1081.0
     

     
     
165480
                           gb|AAG08177.1|AE004892_8
                           (AE004892) hypothetical protein PA4791 [Pseudomonas aeruginosa PAO1]
                           206
                           98.54
                           98.54
                           0
                           1081.0
     

     
     
165481
                           gb|AAO54281.1|
                           (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           218
                           49.54
                           62.84
                           18
                           478.0
     

     
     
165482
                           gb|AAN66204.1|AE016248_7
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           238
                           48.31
                           54.20
                           39
                           483.0
     

     
     
165483
                           gb|AAN66203.1|AE016248_6
                           (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
                           220
                           34.54
                           46.81
                           45
                           297.0
     

     






      

          
GC ORFID: 46701How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4791Glimmer Score: 

          
Start: 4914322Stop: 4914942

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4791 translation of PA4791Homolog Bit Score 421.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3616 (ORF: BLASTX 189.0), t_PA4791 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATCGCGACTGTTGATCCTGCCGTTACTCGCCAGCCTGGCCGCCCTCGGCGCCTGCCAGGGCGACAAT 
CCCTACCGCGCCAGCTCCCTGCCCTACCCGCCGCAGCCGGCCGCCGCGGCCAATCCCGGCCTCGATCCCGGC 
ACCTACCCGGCGGCGCCGCGCGACTACGCCCGCTACCGTAGCTGGAGCTGGGCCGCCGCCGGGGTCAGCGGC 
TTTCCCCAGGGCCTGGACGACAACCAGTTGCGCGACGCCGTCAGCCAGCAGCTCGACCAGCGCGGCCTGCGC 
CCGGCGCGGCCGGGCAGCGCGGCCGACCTGCAGGTCAGCGCGTTCCTGCGCAACGAACTGCGCACCCGCCAG 
GTCACCGACTACTACGGCGGCTACTACGGCAACTACGGCGGCTGGCGCGATCCCTGGTACGGCTATGGCGCC 
AGCTACCCGGTGACCCGCAGCTACACCGTGCAGGTCACCGTGGTCCGCGTCGAGCTGAACGACGCCCGCAGC 
GGCCAGCCGGTGTGGGGCAACAGCGCCGAGTTCGACTCCGGCGACTCCGTCAGCGAACAGGCCAAGGCCCTG 
CGCGAAGCGGTGAAACGGGCGCTGTCGAGCTACCCGCCGGGCTGA