ViewGene
Locus Name:
GeneID:
Location:

GeneID:3646
TrivialName: PA14_35010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35010
PAO1 Ortholog Locus:PA2287
Sequence Length:636
Protein Length:211
Start: 3117575
Stop: 3116940
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05675.1|AE004654_6 (AE004654) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/211 (99%), Positives = 210/211 (99%)
Sequence:
ATGCAAGAAACTGACGAAACCCTCGACGAACTGCCGCCGCTGGAAGCCCGCTGCGAGATCCGCGAGGTCTCG
CGGGGCACCGCCTGCGTTGCCCTGCTCGCTGGCCTGGTGGCTGGCGCCACCGGTCTCTGGCTCGCTTCGCTG
CCCCACGCCTGGCGCCTGGCCAGTGGCCAATGGCTGTTCTGGCTGCCAGCCGCGCTGCTGCTGGGCGGCGGC
CTGTACGCCTGCCTGGCGGGCGTGTTCCTCTACCGGCGCCACGGCCAGGTCGCGCTCACCCTGACCCCGGAG
AGCATCACCTTCGCCAACGCGCCGCAGGTGCCGATGTACACCTTCCAGTCGCTGGAGATCGAGCGCGGGCGC
TGGTTGGAACTCACCTTCGCGACCACCTTCGATTGCACGGCACCGCGCTTCGACAGCCATGCCCGTTTCGAC
CCGCGGGCTTTCGCCCGCCCCGAAGCCCGTGCGGTGGCCGGAGGCAAGCGGGTCAAGCTGGCACTCTGCGGC
GCCGCGCTGAACGGCCAGAAAATGGAACTGGAGCCGCTCGCCCGACTGATCTACCGGTACATCCTCGCCGGC
CATCGCCAGCGCGCCCTGCAACATCATCGCGCGCCCGGGAGCGACGGCAGCGGGGCCTGA
Translation:
MQETDETLDELPPLEARCEIREVSRGTACVALLAGLVAGATGLWLASLPHAWRLASGQWLFWLPAALLLGGG
LYACLAGVFLYRRHGQVALTLTPESITFANAPQVPMYTFQSLEIERGRWLELTFATTFDCTAPRFDSHARFD
PRAFARPEARAVAGGKRVKLALCGAALNGQKMELEPLARLIYRYILAGHRQRALQHHRAPGSDGSGA*
AnnotationID:3654GeneID:3646
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 11:11:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2287
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7295




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24437




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3646
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5843
                           PA2287_tr
                           translation of PA2287
                           211
                           99.05
                           99.52
                           0
                           1097.0
     

     
     
162886
                           gb|AAG05675.1|AE004654_6
                           (AE004654) hypothetical protein PA2287 [Pseudomonas aeruginosa PAO1]
                           211
                           99.05
                           99.52
                           0
                           1097.0
     

     






      

          
GC ORFID: 46648How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2287Glimmer Score: 

          
Start: 1836341Stop: 1836976

          
Length: 636


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2287 translation of PA2287Homolog Bit Score 427.0

          
Other Homologs:  t_PA2287 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGAAACTGACGAAACCCTCGACGAACTGCCGCCGCTGGAAGCCCGCTGCGAGATCCGCGAGGTCTCG 
CGGGGCACCGCCTGCGTTGCCCTGCTCGCTGGCCTGGTGGCTGGCGCCACCGGTCTCTGGCTCGCTTCGCTG 
CCCCACGCCTGGCGCCTGGCCAGTGGCCAATGGCTGTTCTGGCTGCCAGCCGCGCTGCTGCTGGGCGGCGGC 
CTGTACGCCTGCCTGGCGGGCGTGTTCCTCTACCGGCGCCACGGCCAGGTCGCGCTCACCCTGACCCCGGAG 
AGCATCACCTTCGCCAACGCGCCGCAGGTGCCGATGTACACCTTCCAGTCGCTGGAGATCGAGCGCGGGCGC 
TGGTTGGAACTCACCTTCGCGACCACCTTCGATTGCACGGCACCGCGCTTCGACAGCCATGCCCGTTTCGAC 
CCGCGGGCTTTCGCCCGCCCCGAAGCCCGTGCGGTGGCCGGAGGCAAGCGGGTCAAGCTGGCACTCTGCGGC 
GCCGCGCTGAACGGCCAGAAAATGGAACTGGAGCCGCTCGCCCGACTGATCTACCGGTACATCCTCGCCGGC 
CATCGCCAGCGCGCCCTGCAACATCATCGCGCGCCCGGGAGCGACGGCAGCGGGGCCTGA