ViewGene
Locus Name:
GeneID:
Location:

GeneID:3615
TrivialName: PA14_47180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47180
PAO1 Ortholog Locus:PA1319
Sequence Length:630
Protein Length:209
Start: 4203571
Stop: 4202942
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04708.1|AE004561_4 (AE004561) cytochrome o ubiquinol oxidase subunit III [Pseudomonas aeruginosa PAO1]
Identities = 209/209 (100%), Positives = 209/209 (100%)
Sequence:
ATGTCGACGGCAGTATTGAACAAGCATCTGGCCGACGCCCACGAAGTGGGCCACGACCACGATCATGCACAC
GATAGCGGCGGCAACACCGTATTCGGTTTCTGGCTCTACCTGATGACCGACTGCGTGCTGTTCGCCAGCGTC
TTCGCCACCTACGCGGTGCTGGTTCACCACACCGCCGGCGGCCCCAGCGGCAAGGACATCTTCGAGCTGCCC
TACGTGCTGGTGGAAACCGCCATCCTGCTGGTTTCCAGCTGCACCTACGGCCTGGCCATGCTCTCCGCGCAC
AAGGGCGCCAAAGGCCAGGCGATCGCCTGGCTCGGGGTCACCTTCCTGCTCGGCGCCGCGTTCATCGGCATG
GAGATCAACGAGTTCCACCACCTGATCGCCGAAGGTTTCGGCCCGAGCCGCAGCGCCTTCCTGTCGTCCTTC
TTCACCCTGGTCGGCATGCACGGCCTGCACGTCAGCGCCGGCCTGCTGTGGATGCTGGTGCTGATGGCGCAG
ATCTGGACCCGCGGCCTCACCGCGCAGAACAACACCCGGATGATGTGCCTGAGCCTGTTCTGGCACTTCCTC
GACATCGTCTGGATCTGCGTCTTCACCGTCGTCTACCTGATGGGGGCCCTGTAA
Translation:
MSTAVLNKHLADAHEVGHDHDHAHDSGGNTVFGFWLYLMTDCVLFASVFATYAVLVHHTAGGPSGKDIFELP
YVLVETAILLVSSCTYGLAMLSAHKGAKGQAIAWLGVTFLLGAAFIGMEINEFHHLIAEGFGPSRSAFLSSF
FTLVGMHGLHVSAGLLWMLVLMAQIWTRGLTAQNNTRMMCLSLFWHFLDIVWICVFTVVYLMGAL*
AnnotationID:3623GeneID:3615
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 09:09:26
Gene Name:cyoC
Confidence Code:2
GeneProduct:cytochrome o ubiquinol oxidase subunit III
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1845
Secondary Functional Category(ies):
EC Number:1.10.3.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54849.1| (AE016860) cytochrome o ubiquinol oxidase, subunit III [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 210

 Score =  302 bits (774), Expect = 8e-82
 Identities = 145/213 (68%), Positives = 170/213 (79%), Gaps = 7/213 (3%)

>gb|AAO70009.1| (AE016842) cytochrome o ubiquinol oxidase subunit III [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 204

 Score =  296 bits (758), Expect = 5e-80
 Identities = 139/209 (66%), Positives = 166/209 (79%), Gaps = 5/209 (2%)

>gb|AAN79019.1|AE016756_202 (AE016756) Cytochrome O ubiquinol oxidase subunit III [Escherichia
           coli CFT073]
          Length = 204

 Score =  294 bits (752), Expect = 3e-79
 Identities = 139/209 (66%), Positives = 166/209 (79%), Gaps = 5/209 (2%)






 
Structural Features:
COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 
[Energy production and conversion]
CD-Length = 209 residues,  95.2% aligned
Score =  191 bits (486), Expect = 6e-50
Identities = 102/201 (50%), Positives = 137/201 (68%), Gaps = 3/201 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7233




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24375




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37456




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3615_cdd.html


    		




 
URL:

















    ReferenceID:38015




  
Author/Investigator(s):
        Chepuri V, Lemieux L, Au DC, Gennis RB.





  
Title:
        The sequence of the cyo operon indicates substantial structural similarities between the cytochrome o ubiquinol oxidase of Escherichia coli and the aa3-type family of cytochrome c oxidases.




  
PubMed:
        2162835


MedLine:
        




    
Source:
J Biol Chem. 1990 Jul 5;265(19):11185-92.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2162835









           
Homologs By Global Alignment 

           

       



     
Gene ID:3615
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5797
                           PA1319_tr
                           translation of PA1319
                           209
                           99.99
                           99.99
                           0
                           1111.0
     

     
     
161815
                           gb|AAG04708.1|AE004561_4
                           (AE004561) cytochrome o ubiquinol oxidase subunit III [Pseudomonas aeruginosa PAO1]
                           209
                           99.99
                           99.99
                           0
                           1111.0
     

     
     
161816
                           gb|AAO54849.1|
                           (AE016860) cytochrome o ubiquinol oxidase, subunit III [Pseudomonas syringae pv. tomato str. DC3000]
                           213
                           68.07
                           79.81
                           7
                           780.0
     

     
     
161819
                           emb|CAD16622.1|
                           (AL646072) PROBABLE TRANSMEMBRANE CYTOCHROME O UBIQUINOL OXIDASE (SUBUNIT III) OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           211
                           67.29
                           80.56
                           2
                           759.0
     

     
     
161826
                           gb|AAA23633.1|
                           (J05492) cytochrome o ubiquinol oxidase C subunit [Escherichia coli]
                           209
                           66.50
                           79.42
                           5
                           756.0
     

     






      

          
GC ORFID: 46617How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1319Glimmer Score: 

          
Start: 750338Stop: 750967

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1319 translation of PA1319Homolog Bit Score 432.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4442 (ORF: BLASTX 301.0), t_PA1319 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGACGGCAGTATTGAACAAGCATCTGGCCGACGCCCACGAAGTGGGCCACGACCACGATCATGCACAC 
GATAGCGGCGGCAACACCGTATTCGGTTTCTGGCTCTACCTGATGACCGACTGCGTGCTGTTCGCCAGCGTC 
TTCGCCACCTACGCGGTGCTGGTTCACCACACCGCCGGCGGCCCCAGCGGCAAGGACATCTTCGAGCTGCCC 
TACGTGCTGGTGGAAACCGCCATCCTGCTGGTTTCCAGCTGCACCTACGGCCTGGCCATGCTCTCCGCGCAC 
AAGGGCGCCAAAGGCCAGGCGATCGCCTGGCTCGGGGTCACCTTCCTGCTCGGCGCCGCGTTCATCGGCATG 
GAGATCAACGAGTTCCACCACCTGATCGCCGAAGGTTTCGGCCCGAGCCGCAGCGCCTTCCTGTCGTCCTTC 
TTCACCCTGGTCGGCATGCACGGCCTGCACGTCAGCGCCGGCCTGCTGTGGATGCTGGTGCTGATGGCGCAG 
ATCTGGACCCGCGGCCTCACCGCGCAGAACAACACCCGGATGATGTGCCTGAGCCTGTTCTGGCACTTCCTC 
GACATCGTCTGGATCTGCGTCTTCACCGTCGTCTACCTGATGGGGGCCCTGTAA