ViewGene
Locus Name:
GeneID:
Location:

GeneID:3605
TrivialName: PA14_64330
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64330
PAO1 Ortholog Locus:
Sequence Length:882
Protein Length:293
Start: 5733427
Stop: 5734307
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/01/06. PA14_64330 (GeneID 3605 ) and PA14_64340 (GeneID 6786) replaced by PA14_64335 (GeneID 7377). Homology: gb|AAG08249.1|AE004900_3 (AE004900) urease accessory protein [Pseudomonas aeruginosa PAO1]
Identities = 225/260 (86%), Positives = 228/260 (87%), Gaps = 10/260 (3%)
Sequence:
ATGACCGCCGCCCTCCCCGACCTGAGCTTCCACCCCGCCTGGCACGCCCAGCTGGAGCTGGCCTACGCCCGC
GCCGGCGACGCCACACGCCCGGTGACGCGGCGCCACGCCGGACCGCTGCGGGTGCAGAAGCACCTCTACGCC
GAAGGCCCGGAAGTCTGCCAGCACATCCTCGTGCATCCGCCCGGCGGCATCGCCGGCGGCGACAGCCTGGCC
TTCGACGTGCGCCTCGGCGAACGCGCCTGGGCCCAGCTCACCAGCCCCGGCGCGGCCAAGTGGTACCGCGCC
GCCTGCCCGTCGCGGCAGACCCTGGAGATCCACCTGGAGCCCGGCGCCACCCTGGAATGGCTGCCGCAGGAA
AGCATCGTCTTCGCCGGCGCCCAGGCCGAACTGGAAACCCGTATCCAACTGCGCGGCGACGCCCGCCTGTTC
TACTGGGACATGGTCGCGCTCGGCCGCCCGGCCAGCGGCGAGCGCTTCGCCAGCGGCCACTTCGTCGCAGCC
CTGGACATCCGTCGCGACGACCGCCTGCTCTGGCACGAGCGCCAGCGCATCGACGGCGGCGACCGCCTGCTC
GACTCGCCGATCGGCCTCGCCGGGCACCCGGTGCTGGCGACCCTGGTCGCCAGCGGGCGAGATCGACACCGA
CCTGCTGCAACGCTGCCGCGCGCTCCCCTGCGCCGGCCGCGGCAACCTCAGCCAGTTGCCCGGAGGCCTGCT
GGTGGCGCGCTGCCTGGCCGACGAGGCGCTGCACGCGCGAGCCTGGCTGATCGAACTCTGGCGCCTGCTGCG
GCCGGCGCTGCTCGGCCGCGAGGCCGTTCCCCCACGCATCTGGAGTACCTGAGATGGACTTGTCCCCCCGCG
AGAAAGACAAGCTGCTGA
Translation:
MTAALPDLSFHPAWHAQLELAYARAGDATRPVTRRHAGPLRVQKHLYAEGPEVCQHILVHPPGGIAGGDSLA
FDVRLGERAWAQLTSPGAAKWYRAACPSRQTLEIHLEPGATLEWLPQESIVFAGAQAELETRIQLRGDARLF
YWDMVALGRPASGERFASGHFVAALDIRRDDRLLWHERQRIDGGDRLLDSPIGLAGHPVLATLVASGRDRHR
PAATLPRAPLRRPRQPQPVARRPAGGALPGRRGAARASLADRTLAPAAAGAARPRGRSPTHLEYLRWTCPPA
RKTSC*
AnnotationID:3613GeneID:3605
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 14:02:07
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAO58319.1| (AE016873) urease accessory protein UreD [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 281

 Score =  313 bits (803), Expect = 6e-85
 Identities = 150/202 (74%), Positives = 165/202 (81%)






 
Structural Features:






   
Genomic Context:






   
Comment:
Inactivated 2/01/06.  PA14_64330  (GeneID 3605 ) and PA14_64340 (GeneID 6786) replaced by PA14_64335 (GeneID 7377).


















    ReferenceID:7213




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24355




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35183




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3605_cdd.html


    		




 
URL:

















    ReferenceID:35957




  
Author/Investigator(s):
        Maeda M, Hidaka M, Nakamura A, Masaki H, Uozumi T.





  
Title:
        Cloning, sequencing, and expression of thermophilic Bacillus sp. strain TB-90 urease gene complex in Escherichia coli.




  
PubMed:
        8288539


MedLine:
        




    
Source:
J Bacteriol. 1994 Jan;176(2):432-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8288539

















    ReferenceID:35961




  
Author/Investigator(s):
        Jones BD, Mobley HL.





  
Title:
        Proteus mirabilis urease: nucleotide sequence determination and comparison with jack bean urease.




  
PubMed:
        2687233


MedLine:
        




    
Source:
J Bacteriol. 1989 Dec;171(12):6414-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2687233









           
Homologs By Global Alignment 

           

       



     
Gene ID:3605
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5775
                           PA4864_tr
                           translation of PA4864
                           308
                           75.64
                           76.62
                           43
                           1128.0
     

     
     
161202
                           gb|AAG08249.1|AE004900_3
                           (AE004900) urease accessory protein [Pseudomonas aeruginosa PAO1]
                           308
                           75.64
                           76.62
                           43
                           1128.0
     

     
     
161203
                           gb|AAO58319.1|
                           (AE016873) urease accessory protein UreD [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           55.80
                           62.25
                           46
                           803.0
     

     
     
161204
                           emb|CAD15738.1|
                           (AL646067) PROBABLE UREASE ACCESSORY PROTEIN URED [Ralstonia solanacearum]
                           325
                           35.38
                           44.92
                           62
                           419.0
     

     
     
161205
                           gb|AAN68450.1|AE016478_2
                           (AE016784) urease accessory protein UreD [Pseudomonas putida KT2440]
                           309
                           34.95
                           45.30
                           48
                           393.0
     

     






      

          
GC ORFID: 46607How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4864Glimmer Score: 

          
Start: 4997107Stop: 4997988

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4864 translation of PA4864Homolog Bit Score 434.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5802 (ORF: BLASTX 315.0), t_PA4864 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCGCCCTCCCCGACCTGAGCTTCCACCCCGCCTGGCACGCCCAGCTGGAGCTGGCCTACGCCCGC 
GCCGGCGACGCCACACGCCCGGTGACGCGGCGCCACGCCGGACCGCTGCGGGTGCAGAAGCACCTCTACGCC 
GAAGGCCCGGAAGTCTGCCAGCACATCCTCGTGCATCCGCCCGGCGGCATCGCCGGCGGCGACAGCCTGGCC 
TTCGACGTGCGCCTCGGCGAACGCGCCTGGGCCCAGCTCACCAGCCCCGGCGCGGCCAAGTGGTACCGCGCC 
GCCTGCCCGTCGCGGCAGACCCTGGAGATCCACCTGGAGCCCGGCGCCACCCTGGAATGGCTGCCGCAGGAA 
AGCATCGTCTTCGCCGGCGCCCAGGCCGAACTGGAAACCCGTATCCAACTGCGCGGCGACGCCCGCCTGTTC 
TACTGGGACATGGTCGCGCTCGGCCGCCCGGCCAGCGGCGAGCGCTTCGCCAGCGGCCACTTCGTCGCAGCC 
CTGGACATCCGTCGCGACGACCGCCTGCTCTGGCACGAGCGCCAGCGCATCGACGGCGGCGACCGCCTGCTC 
GACTCGCCGATCGGCCTCGCCGGGCACCCGGTGCTGGCGACCCTGGTCGCCAGCGGGCGAGATCGACACCGA 
CCTGCTGCAACGCTGCCGCGCGCTCCCCTGCGCCGGCCGCGGCAACCTCAGCCAGTTGCCCGGAGGCCTGCT 
GGTGGCGCGCTGCCTGGCCGACGAGGCGCTGCACGCGCGAGCCTGGCTGATCGAACTCTGGCGCCTGCTGCG 
GCCGGCGCTGCTCGGCCGCGAGGCCGTTCCCCCACGCATCTGGAGTACCTGAGATGGACTTGTCCCCCCGCG 
AGAAAGACAAGCTGCTGA