ViewGene
Locus Name:
GeneID:
Location:

GeneID:36
TrivialName: PA14_67530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67530
PAO1 Ortholog Locus:PA5114
Sequence Length:3606
Protein Length:1201
Start: 6033596
Stop: 6029991
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08499.1|AE004924_4 (AE004924) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1198/1201 (99%), Positives = 1199/1201 (99%)
Sequence:
ATGCAATGGATTTTCATGCTGGTGGGCCTGATCCTCGGCGGCTTCGCCGGGGAATCGCTGGTCGGCGCCCTC
CTCGGCGGCCTTTCCGGCCTGGCCCTGGGACAGGCCGTCTCGCTGCAGAACCTGGCGCAACAGAACGATCGC
CTGCGCAAGCAGATGAGCGAATTCGCCGAACGCTTCGAGCGCGGCACCGAGGTCATCCACCAGCGCTTGCTG
CGCGTGGAGCGCCAGGCGCAGGACCTTCCCGAAAGCGTTCCCGAGCCGGCCGCCGGCATCGACCAGCCGCTC
GCAGACACGCCTCCCGCTCCTCCCGCCGAGGTTGCCCCGCCGCTGGACTGGGACATCGAGCTGCCGGCCGTC
GAGGCTGCGCCGCCTCCGCCTCGTCCCCCCGAACCCGTCCAGCCCATCGAGCGTCAGCCGGCGTTCCAGCCT
GACGCCCAGCCAGCGCCGCGCCGTGCCGCCCCTCCAGCGCCTCCACGCGAACCCTCGCTGGTCGAGCGTGGC
TTCGCCGCGGCCAAGGGCTGGCTGTTCGGCGGCAACACGGTATTGCGCATCGGCGTGGTGCTGCTGTTCATC
GGCCTGGCCTTCCTCCTGCGCTATGCCTCGGAACGGGTGGCGGTGCCGGTGGAGTACCGCTACGCCGGGGTG
GCGCTGGCAGCGATGGCGCTGCTCGGCGTCGGCTGGTGGTTGCGCGAGCGGCGCGCCGCCTACGGCCTGATC
CTGCAAGGCACCGGTATCGCGGTGCTGTACCTGACCATCTTCGCCGCCATGCGCCTGCATCCGCTGATCTCT
CCCGGCGCGGCGCTGGCCCTGCTGGTGGTGGTGACGATCTGCTCGGCGATCCTCGCCGTGCTGCAGAACGCC
ATGGGCCTGGCGGTGGTGGCGGCGCTCGGCGGCTTCGCCGCGCCGATCCTGACCTCCACCGGCAGCGGCAAC
CATGTAGCGCTGTTCAGCTACTTCGCCCTGCTCAACGCCGGCATCTTCGCCATCGCCTGGTTCCGCGCCTGG
CGGCCGCTCAACCTGGTCGGCTTCGTCGGCACCTTCGGCATCGGCTTCGCCTGGGGACTGCGCTCCTATACA
CCGGAGCTGTTCGCCAGCACCGAGCCGTTCCTGGCCCTGTTCTTCCTGATGTACGTCGGGATCGGCCTGCTC
TTCGCCCGCCGCAAGCTGCTGGAGGCCGCGCAGGCGCCTGCCGAGCGCGGCGAACTGCTGCGCTGGTCGGCG
CGACAGGCCGACTACATCGACGCCACCGTGCTGTTCGGCCCGCCACTGGTGGGGTTCGGCCTGCAATGCGCG
GTGATCGGCCACATCGACTTCGGCATGGCCTTCAGCGCCCTGGCCCTGGGCCTCTTCTACATGGTCCTGGCG
CGGGTGCTGCGCGGCCATGCTTCGGCCGGACGCACCAGCCTGCTGGTGGAAATCTGCCTGGCGCTGGGGGTG
GTCTTCGGCACCCTGGCCATTCCGCTCGGCCTGGACGCGCGCTGGACCTCGGCCGCCTGGGCCGTCGAGGGC
GCCGGCATCTACTGGCTCGGCCTGCACCAGCAACGCCGCCTGGCGCGGCTCTTCGCCCTGCTGTTGCAGGGC
GGTGCGGCGTTGGCCTACCTGAATGGCGTGCGCCCGGGTGAGACGACGTTGCTGGAGGGTTCGCCGCTGGGC
GCGCTGATGCTCGGTGCGGCGGCGCTGTTCAGCTTCTGGCAGCTGCGTCGCGCGCCGGCGAAAGCGCTGGCC
GACTGGGAGCCGGCCTGCCGGCCGTTGCTGGCGGCCGCCGGCCTGGCCTTCCTCTACCTGGTCGCACCGCTC
TGCCTGGCCGTCGACAGCACCGCCATCGCCTGGGCCGTGGCCGGCCTGGCGAGCTTGTTCGCCGGCTTGCGC
CTGGGCTCGCGTACCTTCCTGTTCTGCGCCTTCGCCGTGCAACTGCTGGGCGGTGCGCTGTTCCTCCTGCAT
TTGCAGGGCGGCGATGGCCAGGGTGGGGTATTCGACTCGGGCTGGCGTGGCTTGATGACCGCCTCGCTGATT
GGCCTGGCGCTGATCGGCGGCATGCTGCTGGCGGCGCGCGACCCGCTGGTGAAGGACGACAGTCGGCTGCTC
ATGGGCTTGAGCCTGGTGCTGCTGGCCGGTCTGGCGTTCGTCAACCTGGCAGTGCTGTTCGTCCTGCCTTGG
CGCAGCGCCAGCGCGGTATGGGCCGGTAGCGGGCTGCTGATCATCTGGCTGAGCCTGGTGCTGCGCCAGCGC
CTGAGCTTCTACTTCGGCCTCGCCTTGCAGGTAGTGGGCGGCCTGGCGTTCCTCCTCGCCGGGCCGTCGCTG
TTCGGCTCGCTGAGCGGCGAAGGCCTGCGGCCCCTGGCCCATTCCGGGTTCTGGACGCCGGCAGTGCTGGCC
CTGGCGGCGCTGGTCGGCGCCTGGCGGCTGCGCCGCGCCGGCGAGCGCGAGCGGGCGCTGGGTATCGGTACC
CTCGGCCTGGCCGAGCTGTCGCACTTGCTGCTGCTCTGGGGAGCCGGCTGGTGGGCGCTGACCGCGCTGTGC
GAAACCGTCCGCTTCGTGCCTTATGGCCTGCGCGAGCATGCGTTGCTGCTGGTGGCCGCGGCGACAGTGGCG
TCGTGGATGCTGCTGGCGCTGCGCGAGCGCTGGCGCGAACTGGCCCTGCTGTGCCTGGCGCTGGTCCCGGTG
GCGCTGTTGGCCCTGGCCAGTGCCTGGCGTTTCGATTACCAGCCGTTCGGCGAATTCGGCTGGCTGGCCTGG
CCGCTGCTGTTCGCCACGCACCTGCTGTCGCTGCGACGCCTTGCCCCGTTGCTGCCGGCGAAGGCCCTGAGC
GTTGCCCATGTGCTCGGTTGCTGGCTGTTGCTAGGGGTGCTGGCGCTGGAGCTGCGCTACCTGTTCGCCCTG
CTCGCCGAACAGTACAACGCCTGGCGTTGGCTGGGCTGGGCGTTGGTCCCGAGCGCCTACCTGCTGCTGGTG
GCTGGCGGGCGGAGCCTGCCCTGGCCGCTGCGCGACTTCCCGCGGGAGTATCGGCTGCTCGCCGCTGCGCCG
GTGGCGCTGTTGCTGCTCGGCTGGTTCTGGAGCGCCAACCTGCTCAGCGACGGCGCTGCCGAGCCGCTGCCT
TACCTGCCGCTGGCCAACCCGCTGGAACTGGGGCTGCTGATCGTGCTGTTCGCCCTCTACCGCTGGAGCGAC
GCCAGCCTGGCCTCGCTCGTCGATGGCAATGCCAGCGCGCGCCTGGGGCGCCAGGCGTTGGCCGGCGCCTCG
CTGTTCGCCCTGCTGACCCTGGCGGTGTGCCGCGCCGCGCACCACCTGGCCGGCGTACCGTTCCAGGCCGAG
GCGCTGGCCGCGTCGATGCTGGTGCAGGCGGGGCTGTCGCTGGTCTGGACGCTCTGTGCGCTGGGCCTGACC
ATCGCCGGTACCCGTCTCGGCCGGCGCGACCTGTGGATGGTCGGCGCGGCGCTGGTCGGCGTCGTGGTGGTC
AAGCTGTTCTTCGTCGAGCTGGGCAACAGTGGCAGCCTGGAGCGAATCATCTCCTTCATCGGGGTCGGCGTC
CTGTTGCTGGTCGTCGGCTACTTCTCACCCTTGCCTCCGCGTCGCGCCGAGGTCGCATCGGAGGCCGAGCAG
CCATGA
Translation:
MQWIFMLVGLILGGFAGESLVGALLGGLSGLALGQAVSLQNLAQQNDRLRKQMSEFAERFERGTEVIHQRLL
RVERQAQDLPESVPEPAAGIDQPLADTPPAPPAEVAPPLDWDIELPAVEAAPPPPRPPEPVQPIERQPAFQP
DAQPAPRRAAPPAPPREPSLVERGFAAAKGWLFGGNTVLRIGVVLLFIGLAFLLRYASERVAVPVEYRYAGV
ALAAMALLGVGWWLRERRAAYGLILQGTGIAVLYLTIFAAMRLHPLISPGAALALLVVVTICSAILAVLQNA
MGLAVVAALGGFAAPILTSTGSGNHVALFSYFALLNAGIFAIAWFRAWRPLNLVGFVGTFGIGFAWGLRSYT
PELFASTEPFLALFFLMYVGIGLLFARRKLLEAAQAPAERGELLRWSARQADYIDATVLFGPPLVGFGLQCA
VIGHIDFGMAFSALALGLFYMVLARVLRGHASAGRTSLLVEICLALGVVFGTLAIPLGLDARWTSAAWAVEG
AGIYWLGLHQQRRLARLFALLLQGGAALAYLNGVRPGETTLLEGSPLGALMLGAAALFSFWQLRRAPAKALA
DWEPACRPLLAAAGLAFLYLVAPLCLAVDSTAIAWAVAGLASLFAGLRLGSRTFLFCAFAVQLLGGALFLLH
LQGGDGQGGVFDSGWRGLMTASLIGLALIGGMLLAARDPLVKDDSRLLMGLSLVLLAGLAFVNLAVLFVLPW
RSASAVWAGSGLLIIWLSLVLRQRLSFYFGLALQVVGGLAFLLAGPSLFGSLSGEGLRPLAHSGFWTPAVLA
LAALVGAWRLRRAGERERALGIGTLGLAELSHLLLLWGAGWWALTALCETVRFVPYGLREHALLLVAAATVA
SWMLLALRERWRELALLCLALVPVALLALASAWRFDYQPFGEFGWLAWPLLFATHLLSLRRLAPLLPAKALS
VAHVLGCWLLLGVLALELRYLFALLAEQYNAWRWLGWALVPSAYLLLVAGGRSLPWPLRDFPREYRLLAAAP
VALLLLGWFWSANLLSDGAAEPLPYLPLANPLELGLLIVLFALYRWSDASLASLVDGNASARLGRQALAGAS
LFALLTLAVCRAAHHLAGVPFQAEALAASMLVQAGLSLVWTLCALGLTIAGTRLGRRDLWMVGAALVGVVVV
KLFFVELGNSGSLERIISFIGVGVLLLVVGYFSPLPPRRAEVASEAEQP*
AnnotationID:46GeneID:36
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 08:08:05
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5114
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5373
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58592.1| (AE016874) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 939

 Score =  567 bits (1461), Expect = e-160
 Identities = 326/644 (50%), Positives = 415/644 (64%), Gaps = 41/644 (6%)








 
Structural Features:
COG5373, COG5373, Predicted membrane protein
CD-Length = 931 residues,  99.9% aligned
Score =  607 bits (1567), Expect = 2e-174
Identities = 423/1162 (36%), Positives = 505/1162 (43%), Gaps = 240/1162 (20%)






   
Genomic Context:






   
Comment:


















    ReferenceID:75




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38068




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:36_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:36
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
72
                           PA5114_tr
                           translation of PA5114
                           1201
                           99.75
                           99.83
                           0
                           6106.0
     

     
     
11340
                           gb|AAG08499.1|AE004924_4
                           (AE004924) hypothetical protein PA5114 [Pseudomonas aeruginosa PAO1]
                           1201
                           99.75
                           99.83
                           0
                           6106.0
     

     
     
11341
                           gb|AAO58592.1|
                           (AE016874) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           1220
                           42.70
                           53.11
                           300
                           2365.0
     

     
     
11342
                           gb|AAM38193.1|
                           (AE011981) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           1262
                           29.23
                           41.28
                           375
                           1207.0
     

     






      

          
GC ORFID: 43038How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5114Glimmer Score: 

          
Start: 5297281Stop: 5293676

          
Length: 3606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5114 translation of PA5114Homolog Bit Score 2356.0

          
Other Homologs:  t_PA5114 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATGGATTTTCATGCTGGTGGGCCTGATCCTCGGCGGCTTCGCCGGGGAATCGCTGGTCGGCGCCCTC 
CTCGGCGGCCTTTCCGGCCTGGCCCTGGGACAGGCCGTCTCGCTGCAGAACCTGGCGCAACAGAACGATCGC 
CTGCGCAAGCAGATGAGCGAATTCGCCGAACGCTTCGAGCGCGGCACCGAGGTCATCCACCAGCGCTTGCTG 
CGCGTGGAGCGCCAGGCGCAGGACCTTCCCGAAAGCGTTCCCGAGCCGGCCGCCGGCATCGACCAGCCGCTC 
GCAGACACGCCTCCCGCTCCTCCCGCCGAGGTTGCCCCGCCGCTGGACTGGGACATCGAGCTGCCGGCCGTC 
GAGGCTGCGCCGCCTCCGCCTCGTCCCCCCGAACCCGTCCAGCCCATCGAGCGTCAGCCGGCGTTCCAGCCT 
GACGCCCAGCCAGCGCCGCGCCGTGCCGCCCCTCCAGCGCCTCCACGCGAACCCTCGCTGGTCGAGCGTGGC 
TTCGCCGCGGCCAAGGGCTGGCTGTTCGGCGGCAACACGGTATTGCGCATCGGCGTGGTGCTGCTGTTCATC 
GGCCTGGCCTTCCTCCTGCGCTATGCCTCGGAACGGGTGGCGGTGCCGGTGGAGTACCGCTACGCCGGGGTG 
GCGCTGGCAGCGATGGCGCTGCTCGGCGTCGGCTGGTGGTTGCGCGAGCGGCGCGCCGCCTACGGCCTGATC 
CTGCAAGGCACCGGTATCGCGGTGCTGTACCTGACCATCTTCGCCGCCATGCGCCTGCATCCGCTGATCTCT 
CCCGGCGCGGCGCTGGCCCTGCTGGTGGTGGTGACGATCTGCTCGGCGATCCTCGCCGTGCTGCAGAACGCC 
ATGGGCCTGGCGGTGGTGGCGGCGCTCGGCGGCTTCGCCGCGCCGATCCTGACCTCCACCGGCAGCGGCAAC 
CATGTAGCGCTGTTCAGCTACTTCGCCCTGCTCAACGCCGGCATCTTCGCCATCGCCTGGTTCCGCGCCTGG 
CGGCCGCTCAACCTGGTCGGCTTCGTCGGCACCTTCGGCATCGGCTTCGCCTGGGGACTGCGCTCCTATACA 
CCGGAGCTGTTCGCCAGCACCGAGCCGTTCCTGGCCCTGTTCTTCCTGATGTACGTCGGGATCGGCCTGCTC 
TTCGCCCGCCGCAAGCTGCTGGAGGCCGCGCAGGCGCCTGCCGAGCGCGGCGAACTGCTGCGCTGGTCGGCG 
CGACAGGCCGACTACATCGACGCCACCGTGCTGTTCGGCCCGCCACTGGTGGGGTTCGGCCTGCAATGCGCG 
GTGATCGGCCACATCGACTTCGGCATGGCCTTCAGCGCCCTGGCCCTGGGCCTCTTCTACATGGTCCTGGCG 
CGGGTGCTGCGCGGCCATGCTTCGGCCGGACGCACCAGCCTGCTGGTGGAAATCTGCCTGGCGCTGGGGGTG 
GTCTTCGGCACCCTGGCCATTCCGCTCGGCCTGGACGCGCGCTGGACCTCGGCCGCCTGGGCCGTCGAGGGC 
GCCGGCATCTACTGGCTCGGCCTGCACCAGCAACGCCGCCTGGCGCGGCTCTTCGCCCTGCTGTTGCAGGGC 
GGTGCGGCGTTGGCCTACCTGAATGGCGTGCGCCCGGGTGAGACGACGTTGCTGGAGGGTTCGCCGCTGGGC 
GCGCTGATGCTCGGTGCGGCGGCGCTGTTCAGCTTCTGGCAGCTGCGTCGCGCGCCGGCGAAAGCGCTGGCC 
GACTGGGAGCCGGCCTGCCGGCCGTTGCTGGCGGCCGCCGGCCTGGCCTTCCTCTACCTGGTCGCACCGCTC 
TGCCTGGCCGTCGACAGCACCGCCATCGCCTGGGCCGTGGCCGGCCTGGCGAGCTTGTTCGCCGGCTTGCGC 
CTGGGCTCGCGTACCTTCCTGTTCTGCGCCTTCGCCGTGCAACTGCTGGGCGGTGCGCTGTTCCTCCTGCAT 
TTGCAGGGCGGCGATGGCCAGGGTGGGGTATTCGACTCGGGCTGGCGTGGCTTGATGACCGCCTCGCTGATT 
GGCCTGGCGCTGATCGGCGGCATGCTGCTGGCGGCGCGCGACCCGCTGGTGAAGGACGACAGTCGGCTGCTC 
ATGGGCTTGAGCCTGGTGCTGCTGGCCGGTCTGGCGTTCGTCAACCTGGCAGTGCTGTTCGTCCTGCCTTGG 
CGCAGCGCCAGCGCGGTATGGGCCGGTAGCGGGCTGCTGATCATCTGGCTGAGCCTGGTGCTGCGCCAGCGC 
CTGAGCTTCTACTTCGGCCTCGCCTTGCAGGTAGTGGGCGGCCTGGCGTTCCTCCTCGCCGGGCCGTCGCTG 
TTCGGCTCGCTGAGCGGCGAAGGCCTGCGGCCCCTGGCCCATTCCGGGTTCTGGACGCCGGCAGTGCTGGCC 
CTGGCGGCGCTGGTCGGCGCCTGGCGGCTGCGCCGCGCCGGCGAGCGCGAGCGGGCGCTGGGTATCGGTACC 
CTCGGCCTGGCCGAGCTGTCGCACTTGCTGCTGCTCTGGGGAGCCGGCTGGTGGGCGCTGACCGCGCTGTGC 
GAAACCGTCCGCTTCGTGCCTTATGGCCTGCGCGAGCATGCGTTGCTGCTGGTGGCCGCGGCGACAGTGGCG 
TCGTGGATGCTGCTGGCGCTGCGCGAGCGCTGGCGCGAACTGGCCCTGCTGTGCCTGGCGCTGGTCCCGGTG 
GCGCTGTTGGCCCTGGCCAGTGCCTGGCGTTTCGATTACCAGCCGTTCGGCGAATTCGGCTGGCTGGCCTGG 
CCGCTGCTGTTCGCCACGCACCTGCTGTCGCTGCGACGCCTTGCCCCGTTGCTGCCGGCGAAGGCCCTGAGC 
GTTGCCCATGTGCTCGGTTGCTGGCTGTTGCTAGGGGTGCTGGCGCTGGAGCTGCGCTACCTGTTCGCCCTG 
CTCGCCGAACAGTACAACGCCTGGCGTTGGCTGGGCTGGGCGTTGGTCCCGAGCGCCTACCTGCTGCTGGTG 
GCTGGCGGGCGGAGCCTGCCCTGGCCGCTGCGCGACTTCCCGCGGGAGTATCGGCTGCTCGCCGCTGCGCCG 
GTGGCGCTGTTGCTGCTCGGCTGGTTCTGGAGCGCCAACCTGCTCAGCGACGGCGCTGCCGAGCCGCTGCCT 
TACCTGCCGCTGGCCAACCCGCTGGAACTGGGGCTGCTGATCGTGCTGTTCGCCCTCTACCGCTGGAGCGAC 
GCCAGCCTGGCCTCGCTCGTCGATGGCAATGCCAGCGCGCGCCTGGGGCGCCAGGCGTTGGCCGGCGCCTCG 
CTGTTCGCCCTGCTGACCCTGGCGGTGTGCCGCGCCGCGCACCACCTGGCCGGCGTACCGTTCCAGGCCGAG 
GCGCTGGCCGCGTCGATGCTGGTGCAGGCGGGGCTGTCGCTGGTCTGGACGCTCTGTGCGCTGGGCCTGACC 
ATCGCCGGTACCCGTCTCGGCCGGCGCGACCTGTGGATGGTCGGCGCGGCGCTGGTCGGCGTCGTGGTGGTC 
AAGCTGTTCTTCGTCGAGCTGGGCAACAGTGGCAGCCTGGAGCGAATCATCTCCTTCATCGGGGTCGGCGTC 
CTGTTGCTGGTCGTCGGCTACTTCTCACCCTTGCCTCCGCGTCGCGCCGAGGTCGCATCGGAGGCCGAGCAG 
CCATGA