ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3562

TrivialName: PA14_05900

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_05900

PAO1 Ortholog Locus: PA0453

Sequence Length: 675

Protein Length: 224

Start: 523777

Stop: 523103

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03842.1|AE004482_9 (AE004482) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 222/224 (99%), Positives = 222/224 (99%)

Sequence:

ATGCCGGGGATTCCTCAGGCTCACCAGCAGGTGCAGGCCGTTCTCGCCAAGCGGGGTGGGCAGTACCTCCAG
CTTGTCGCGCAAATCGGCCAGTTCGCCCTTGAAGGCGACCCCCAGCGCCAGCTCGTCCTCCACCGCCAGGTC
GACCCGCCCCGCCTCGAGCATCCGCGCGGCGTTGGCGAAGCTGGTCACGTTGACCTTCTGCAGACGGCTGTC
ACGGTCGAATTCGGGCGCGTAGGCATAGTCGCGCACGACCGCGATGCGGTAGGGACGCAGGTCGCTCAGGCG
GGAAAACTCGATACCCCGCCCCTTGCGTTGCAGCAGGCGAATGCGGTTGCTCAGGTAGGCGCGGGAAAACTG
CCCGTAGAGGCTGCGGGCGGGCTCGTACCAGGCGCTCAGGGCGATGTCGTAGTCACCGCTGCGCACGCCGTG
CAGGGCACGCGACCAGGGTACCTGCTGGAAGCTCGAGTCGAAGCCGGCGCGCTTGAGCGCGGTGGTCACCAG
TTCCACCGCCAGGCCGTTGCCAGGCAGGCGCGAATCGACGAAAGGCGGCCAGGAGTCGCCGACCAGGCGCAG
GTTGGCGGCAGGCAGCGCGCAAGGGAGGAGCAATGTCAGCAGCAGGAGTGCGCATCGCAGCATGAAGGAGCG
TCCCGGGAGTGGATCGCCACAGCATAG

Translation:

MPGIPQAHQQVQAVLAKRGGQYLQLVAQIGQFALEGDPQRQLVLHRQVDPPRLEHPRGVGEAGHVDLLQTAV
TVEFGRVGIVAHDRDAVGTQVAQAGKLDTPPLALQQANAVAQVGAGKLPVEAAGGLVPGAQGDVVVTAAHAV
QGTRPGYLLEARVEAGALERGGHQFHRQAVARQARIDERRPGVADQAQVGGRQRAREEQCQQQECASQHEGA
SREWIATA*

AnnotationID:3570 GeneID:3562

AnnotatorUID: diggins

Modification Date/Time: 2005-03-25 13:01:07

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0453

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:7127

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24269

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3562

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5682 PA0453_tr translation of PA0453 224 99.10 99.10 0 1136.0

158207 gb|AAG03842.1|AE004482_9 (AE004482) hypothetical protein PA0453 [Pseudomonas aeruginosa PAO1] 224 99.10 99.10 0 1136.0

GC ORFID: `46564`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0453`	Glimmer Score:
Start: `6325119`	Stop: `6324445`
Length: `675`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0453 translation of PA0453`	Homolog Bit Score `442.0`
Other Homologs: `t_PA0453 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCGGGGATTCCTCAGGCTCACCAGCAGGTGCAGGCCGTTCTCGCCAAGCGGGGTGGGCAGTACCTCCAG CTTGTCGCGCAAATCGGCCAGTTCGCCCTTGAAGGCGACCCCCAGCGCCAGCTCGTCCTCCACCGCCAGGTC GACCCGCCCCGCCTCGAGCATCCGCGCGGCGTTGGCGAAGCTGGTCACGTTGACCTTCTGCAGACGGCTGTC ACGGTCGAATTCGGGCGCGTAGGCATAGTCGCGCACGACCGCGATGCGGTAGGGACGCAGGTCGCTCAGGCG GGAAAACTCGATACCCCGCCCCTTGCGTTGCAGCAGGCGAATGCGGTTGCTCAGGTAGGCGCGGGAAAACTG CCCGTAGAGGCTGCGGGCGGGCTCGTACCAGGCGCTCAGGGCGATGTCGTAGTCACCGCTGCGCACGCCGTG CAGGGCACGCGACCAGGGTACCTGCTGGAAGCTCGAGTCGAAGCCGGCGCGCTTGAGCGCGGTGGTCACCAG TTCCACCGCCAGGCCGTTGCCAGGCAGGCGCGAATCGACGAAAGGCGGCCAGGAGTCGCCGACCAGGCGCAG GTTGGCGGCAGGCAGCGCGCAAGGGAGGAGCAATGTCAGCAGCAGGAGTGCGCATCGCAGCATGAAGGAGCG TCCCGGGAGTGGATCGCCACAGCATAG