ViewGene
Locus Name:
GeneID:
Location:

GeneID:3534
TrivialName: PA14_20410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20410
PAO1 Ortholog Locus:
Sequence Length:1167
Protein Length:388
Start: 1756435
Stop: 1755269
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA24351.1| (J05260) ORF114 [Escherichia coli]
Identities = 46/111 (41%), Positives = 61/111 (54%)
Sequence:
ATGGGCTTGCTCCTGGCGGGAAAGCTCCTGGCTCATGTCCAGGTAGCGGCTGGCCACCGCCTCGCGGGCGGC
GCGGTCGTGGAAGATGCCGATCAACGCGGCGCCGGCGCCCTTGGCTTCGCCGATCAGTTCCAGCACTACCTG
GCGGTTGGCTTCGTCGAGGGACGCGGTCGGCTCGTCGAGCAGCAGGATCGGCCACTCGACCATGAAGCCGCG
GGCAATGTTGACGCGTTGCTGCTCGCCGCCGGAAAAGGTGCCCGGCGCCAGTTGCCAGAGGCGTTCCGGGAT
GTTCAGCCGGGCCAGCAGGCTGCGCGCCCGCAGTTCGGCGCTGTCGCGGCTCCAGCCACGGGCCAGGGCCGG
CTCCATGACCACGTCGAGGGTCGCCACCCGCGGGATCACCCGCAGGAACTGGCTGACGTAGCCGAGGGTCTG
GCGGCGCACGGCGAGCACCTCGCGAGGCTCGGCGCCGACCAGTTCCAGCCAGTCGCCGGCGTGGCGCAGGCG
GATGCTGCCGCCGGCCGGCAGGTAGTTGCCGTAGAGCGTGCGCAGCAGGGTGCTCTTGCCGGCGCCGGAGCG
TCCGTGGAGCACCAGGCATTCGCCGCCGGCGACATTGAAGTTGAGCCCGCGCAGCACATTGAGCACTACGCC
CTGTTGCTGGTGCAGGGTGAAGGTCTTGCTGAGGTCGCGGACCTCGATCAGGTTGTTCATCGCTACTTCTCC
GGGCGCCCGTCGCGCGGACCGGCGCCGACGCTTTCGGCTCAGGGTTGCAGGACCGACGACACCAGCAATTGC
GTGTACGGATGCTGCGGGTCGTCGAGAATCTGGTCGGTGAGACCGGCTTCCACCACCCGCGAACGGCGCATG
ACCATCAGGCGGTCGGCGAGCAGGCGCGCCACCGCCAGGTCGTGGGTGACGATCACCACCGCCAGGTCCAGC
TCGCGCACCAGGCCGCGCAGCAGGTCGAGCAGGCGCGCCTGCACCGACACGTCGAGGCCGCCGGTGGGTTCG
TCCATGAACACCAGGCGTGGCGCCGAGACCAGGTTGCGGGCGATCTGCAGGCGCTGCTGCATGCCGCCGGAA
AAGGTTCGCGGCAGGTCGTCGATGCGCAGCGGATCGATCTCCACCTGTTCCAGCCAGTCCAGCCCGGCCTGG
CGCAGCCGACCGTAA
Translation:
MGLLLAGKLLAHVQVAAGHRLAGGAVVEDADQRGAGALGFADQFQHYLAVGFVEGRGRLVEQQDRPLDHEAA
GNVDALLLAAGKGARRQLPEAFRDVQPGQQAARPQFGAVAAPATGQGRLHDHVEGRHPRDHPQELADVAEGL
AAHGEHLARLGADQFQPVAGVAQADAAAGRQVVAVERAQQGALAGAGASVEHQAFAAGDIEVEPAQHIEHYA
LLLVQGEGLAEVADLDQVVHRYFSGRPSRGPAPTLSAQGCRTDDTSNCVYGCCGSSRIWSVRPASTTRERRM
TIRRSASRRATARSWVTITTARSSSRTRPRSRSSRRACTDTSRPPVGSSMNTRRGAETRLRAICRRCCMPPE
KVRGRSSMRSGSISTCSSQSSPAWRSRP*
AnnotationID:3542GeneID:3534
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 07:07:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7071




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24213




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 46536How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene239Glimmer Score: 

          
Start: 3197497Stop: 3198663

          
Length: 1167


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene239 related to: gi|141581|sp|P16697|YZP4_ECOLI VERY HYPOTHETICAL 12.5 KD PROTEIN IN PHN OPERON (ORF114) pir||C35720 hypothetical 12.4K protein - Escherichia coli gb|AAA24351.1| (J05260) ORF114 [Escherichia coli]Homolog Bit Score 446.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGGCTTGCTCCTGGCGGGAAAGCTCCTGGCTCATGTCCAGGTAGCGGCTGGCCACCGCCTCGCGGGCGGC 
GCGGTCGTGGAAGATGCCGATCAACGCGGCGCCGGCGCCCTTGGCTTCGCCGATCAGTTCCAGCACTACCTG 
GCGGTTGGCTTCGTCGAGGGACGCGGTCGGCTCGTCGAGCAGCAGGATCGGCCACTCGACCATGAAGCCGCG 
GGCAATGTTGACGCGTTGCTGCTCGCCGCCGGAAAAGGTGCCCGGCGCCAGTTGCCAGAGGCGTTCCGGGAT 
GTTCAGCCGGGCCAGCAGGCTGCGCGCCCGCAGTTCGGCGCTGTCGCGGCTCCAGCCACGGGCCAGGGCCGG 
CTCCATGACCACGTCGAGGGTCGCCACCCGCGGGATCACCCGCAGGAACTGGCTGACGTAGCCGAGGGTCTG 
GCGGCGCACGGCGAGCACCTCGCGAGGCTCGGCGCCGACCAGTTCCAGCCAGTCGCCGGCGTGGCGCAGGCG 
GATGCTGCCGCCGGCCGGCAGGTAGTTGCCGTAGAGCGTGCGCAGCAGGGTGCTCTTGCCGGCGCCGGAGCG 
TCCGTGGAGCACCAGGCATTCGCCGCCGGCGACATTGAAGTTGAGCCCGCGCAGCACATTGAGCACTACGCC 
CTGTTGCTGGTGCAGGGTGAAGGTCTTGCTGAGGTCGCGGACCTCGATCAGGTTGTTCATCGCTACTTCTCC 
GGGCGCCCGTCGCGCGGACCGGCGCCGACGCTTTCGGCTCAGGGTTGCAGGACCGACGACACCAGCAATTGC 
GTGTACGGATGCTGCGGGTCGTCGAGAATCTGGTCGGTGAGACCGGCTTCCACCACCCGCGAACGGCGCATG 
ACCATCAGGCGGTCGGCGAGCAGGCGCGCCACCGCCAGGTCGTGGGTGACGATCACCACCGCCAGGTCCAGC 
TCGCGCACCAGGCCGCGCAGCAGGTCGAGCAGGCGCGCCTGCACCGACACGTCGAGGCCGCCGGTGGGTTCG 
TCCATGAACACCAGGCGTGGCGCCGAGACCAGGTTGCGGGCGATCTGCAGGCGCTGCTGCATGCCGCCGGAA 
AAGGTTCGCGGCAGGTCGTCGATGCGCAGCGGATCGATCTCCACCTGTTCCAGCCAGTCCAGCCCGGCCTGG 
CGCAGCCGACCGTAA