ViewGene
Locus Name:
GeneID:
Location:

GeneID:351
TrivialName: PA14_01110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01110
PAO1 Ortholog Locus:PA0091
Sequence Length:1932
Protein Length:643
Start: 108629
Stop: 110560
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03481.1|AE004447_14 (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 641/643 (99%), Positives = 642/643 (99%)
Sequence:
ATGCAACTGACCCGCCTGGTCCAGGTGGATTGCCCGCTGGGGCCGGACGTGCTGCTGTTGCAGCGCATGGAG
GGACGCGAGGAACTGGGACGGCTGTTCGCCTACGAGCTGCACCTGGTATCGGAAAATCCCAACCTGCCGCTG
GAGCAGTTGCTCGGCAAGCCGATGAGCCTGTCGCTGGAGCTGCCCGGCGGCAGCCGGCGCTTCTTTCACGGT
ATCGTCGCGCGCTGTAGCCAGGTGGCCGGGCACGGCCAGTTCGCCGGCTACCAGGCCACCCTGCGGCCCTGG
CCGTGGCTGCTGACGCGCACCTCGGACTGCCGCATCTTCCAGAACCAGAGCGTGCCGGAGATCATCAAGCAG
GTGTTCCGCGACCTCGGCTTTTCCGATTTCGAGGATGCCCTCACGCGCCCCTACCGCGAGTGGGAATACTGC
GTGCAGTACCGCGAGACCAGCTTCGACTTCATCAGCCGGCTGATGGAACAGGAGGGCATCTACTACTGGTTC
CGCCATGAGCAGAAGCGCCACATCCTGGTGCTCTCCGACGCCTACGGCGCGCATCGCAGCCCGGGTGGCTAC
GCCAGCGTGCCGTACTACCCGCCGACCCTCGGCCATCGCGAGCGCGACCACTTCTTCGACTGGCAGATGGCA
CGCGAGGTCCAGCCCGGTTCGCTGACCCTCAACGACTACGACTTCCAGCGCCCCGGCGCGCGCCTGGAGGTG
CGTTCGAACATCGCCCGGCCGCACGCGGCGGCCGACTACCCGCTGTACGACTATCCCGGCGAATACGTGCAG
AGCCAGGACGGCGAGCAGTACGCGCGCAACCGCATCGAGGCGATCCAGGCGCAGCACGAGCGCGTGCGCCTG
CGCGGCGTGGTGCGTGGGATCGGTGCCGGGCACCTGTTCCGCCTGAGCGGCTATCCGCGCGATGACCAGAAC
CGCGAGTACCTGGTGGTCGGCGCCGAATACCGGGTGGTCCAGGAACTCTACGAAACCGGCAGCGGCGGCGCC
GGCTCGCAGTTCGAGAGCGAGCTGGACTGCATCGACGCCAGCCAGTCGTTCCGCCTCCTGCCGCAGACCCCG
GTGCCGGTGGTGCGCGGTCCGCAGACCGCGGTGGTGGTGGGGCCCAAGGGCGAGGAGATCTGGACCGACCAG
TACGGCCGGGTCAAGGTGCACTTCCACTGGGATCGCCACGACCAGTCGAACGAGAACAGCTCCTGCTGGATT
CGCGTGTCCCAGGCCTGGGCCGGGAAGAACTGGGGTTCGATGCAGATCCCGCGGATCGGCCAGGAAGTGATC
GTCAGCTTCCTCGAAGGCGACCCGGACCGGCCGATCATCACCGGGCGGGTCTACAACGCCGAGCAGACGGTG
CCCTACGAGCTGCCGGCGAACGCCACCCAGAGCGGGATGAAGAGCCGTTCGAGCAAGGGCGGCACGCCGGCC
AACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTACATCCACGCCGAGCGCAACCAG
GACAACCTGGTCGAGAACGATGCCTCGCTGTCGGTCGGCCACGACCGCAACAAGAGCATCGGCCACGACGAG
CTGGTACGCATCGGCAACAACCGCACCCGCGCGGTGAAGCTCAACGACACCCTGCTGGTGGGCGGGGCGAAG
AGCGACAGCGTCACCGGCACCTACCTGATCGAGGCCGGTGCGCAGATCCGCCTGGTCTGCGGCAAGAGCGTG
GTGGAGTTCAACGCCGACGGCACCATCAATATCTCCGGCAGCGCCTTCAACCTCTACGCCAGCGGCAACGGC
AACATCGACACCGGCGGCCGCCTCGACCTCAATTCCGGCGGTGCCAGCGAGGTCGACGCCAAGGGCAAGGGC
GTGCAGGGCACCATCGACGGCCAGGTACAGGCGATGTTTCCGCCGCCGGCGAAGGGCTGA
Translation:
MQLTRLVQVDCPLGPDVLLLQRMEGREELGRLFAYELHLVSENPNLPLEQLLGKPMSLSLELPGGSRRFFHG
IVARCSQVAGHGQFAGYQATLRPWPWLLTRTSDCRIFQNQSVPEIIKQVFRDLGFSDFEDALTRPYREWEYC
VQYRETSFDFISRLMEQEGIYYWFRHEQKRHILVLSDAYGAHRSPGGYASVPYYPPTLGHRERDHFFDWQMA
REVQPGSLTLNDYDFQRPGARLEVRSNIARPHAAADYPLYDYPGEYVQSQDGEQYARNRIEAIQAQHERVRL
RGVVRGIGAGHLFRLSGYPRDDQNREYLVVGAEYRVVQELYETGSGGAGSQFESELDCIDASQSFRLLPQTP
VPVVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAGKNWGSMQIPRIGQEVI
VSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGMKSRSSKGGTPANFNEIRMEDKKGAEQLYIHAERNQ
DNLVENDASLSVGHDRNKSIGHDELVRIGNNRTRAVKLNDTLLVGGAKSDSVTGTYLIEAGAQIRLVCGKSV
VEFNADGTINISGSAFNLYASGNGNIDTGGRLDLNSGGASEVDAKGKGVQGTIDGQVQAMFPPPAKG*
AnnotationID:360GeneID:351
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:27
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:PA0091
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:705




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17847




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:351
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
584
                           PA0091_tr
                           translation of PA0091
                           643
                           99.68
                           99.84
                           0
                           3404.0
     

     
     
28012
                           gb|AAG03481.1|AE004447_14
                           (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           643
                           99.68
                           99.84
                           0
                           3404.0
     

     
     
585
                           PA2685_tr
                           translation of PA2685
                           733
                           66.84
                           72.71
                           97
                           2541.0
     

     
     
28013
                           gb|AAG06073.1|AE004696_7
                           (AE004696) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           733
                           66.84
                           72.71
                           97
                           2541.0
     

     
     
28014
                           gb|AAG03485.1|AE004448_4
                           (AE004448) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           741
                           66.80
                           73.68
                           98
                           2505.0
     

     






      

          
GC ORFID: 43353How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0091Glimmer Score: 

          
Start: 5909968Stop: 5911899

          
Length: 1932


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0091 translation of PA0091Homolog Bit Score 1315.0

          
Other Homologs:  t_PA0091 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACTGACCCGCCTGGTCCAGGTGGATTGCCCGCTGGGGCCGGACGTGCTGCTGTTGCAGCGCATGGAG 
GGACGCGAGGAACTGGGACGGCTGTTCGCCTACGAGCTGCACCTGGTATCGGAAAATCCCAACCTGCCGCTG 
GAGCAGTTGCTCGGCAAGCCGATGAGCCTGTCGCTGGAGCTGCCCGGCGGCAGCCGGCGCTTCTTTCACGGT 
ATCGTCGCGCGCTGTAGCCAGGTGGCCGGGCACGGCCAGTTCGCCGGCTACCAGGCCACCCTGCGGCCCTGG 
CCGTGGCTGCTGACGCGCACCTCGGACTGCCGCATCTTCCAGAACCAGAGCGTGCCGGAGATCATCAAGCAG 
GTGTTCCGCGACCTCGGCTTTTCCGATTTCGAGGATGCCCTCACGCGCCCCTACCGCGAGTGGGAATACTGC 
GTGCAGTACCGCGAGACCAGCTTCGACTTCATCAGCCGGCTGATGGAACAGGAGGGCATCTACTACTGGTTC 
CGCCATGAGCAGAAGCGCCACATCCTGGTGCTCTCCGACGCCTACGGCGCGCATCGCAGCCCGGGTGGCTAC 
GCCAGCGTGCCGTACTACCCGCCGACCCTCGGCCATCGCGAGCGCGACCACTTCTTCGACTGGCAGATGGCA 
CGCGAGGTCCAGCCCGGTTCGCTGACCCTCAACGACTACGACTTCCAGCGCCCCGGCGCGCGCCTGGAGGTG 
CGTTCGAACATCGCCCGGCCGCACGCGGCGGCCGACTACCCGCTGTACGACTATCCCGGCGAATACGTGCAG 
AGCCAGGACGGCGAGCAGTACGCGCGCAACCGCATCGAGGCGATCCAGGCGCAGCACGAGCGCGTGCGCCTG 
CGCGGCGTGGTGCGTGGGATCGGTGCCGGGCACCTGTTCCGCCTGAGCGGCTATCCGCGCGATGACCAGAAC 
CGCGAGTACCTGGTGGTCGGCGCCGAATACCGGGTGGTCCAGGAACTCTACGAAACCGGCAGCGGCGGCGCC 
GGCTCGCAGTTCGAGAGCGAGCTGGACTGCATCGACGCCAGCCAGTCGTTCCGCCTCCTGCCGCAGACCCCG 
GTGCCGGTGGTGCGCGGTCCGCAGACCGCGGTGGTGGTGGGGCCCAAGGGCGAGGAGATCTGGACCGACCAG 
TACGGCCGGGTCAAGGTGCACTTCCACTGGGATCGCCACGACCAGTCGAACGAGAACAGCTCCTGCTGGATT 
CGCGTGTCCCAGGCCTGGGCCGGGAAGAACTGGGGTTCGATGCAGATCCCGCGGATCGGCCAGGAAGTGATC 
GTCAGCTTCCTCGAAGGCGACCCGGACCGGCCGATCATCACCGGGCGGGTCTACAACGCCGAGCAGACGGTG 
CCCTACGAGCTGCCGGCGAACGCCACCCAGAGCGGGATGAAGAGCCGTTCGAGCAAGGGCGGCACGCCGGCC 
AACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTACATCCACGCCGAGCGCAACCAG 
GACAACCTGGTCGAGAACGATGCCTCGCTGTCGGTCGGCCACGACCGCAACAAGAGCATCGGCCACGACGAG 
CTGGTACGCATCGGCAACAACCGCACCCGCGCGGTGAAGCTCAACGACACCCTGCTGGTGGGCGGGGCGAAG 
AGCGACAGCGTCACCGGCACCTACCTGATCGAGGCCGGTGCGCAGATCCGCCTGGTCTGCGGCAAGAGCGTG 
GTGGAGTTCAACGCCGACGGCACCATCAATATCTCCGGCAGCGCCTTCAACCTCTACGCCAGCGGCAACGGC 
AACATCGACACCGGCGGCCGCCTCGACCTCAATTCCGGCGGTGCCAGCGAGGTCGACGCCAAGGGCAAGGGC 
GTGCAGGGCACCATCGACGGCCAGGTACAGGCGATGTTTCCGCCGCCGGCGAAGGGCTGA