ViewGene
Locus Name:
GeneID:
Location:

GeneID:3498
TrivialName: PA14_50560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50560
PAO1 Ortholog Locus:PA1070
Sequence Length:702
Protein Length:233
Start: 4491272
Stop: 4491973
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04459.1|AE004539_1 (AE004539) branched-chain amino acid transport protein BraG [Pseudomonas aeruginosa PAO1]
Identities = 233/233 (100%), Positives = 233/233 (100%)
Sequence:
ATGCTGAGTTTCGACAAGGTTTCCACCTACTACGGCAAGATCCAGGCGCTGCACGACGTCAGCGTGGAAGTG
AAGAAGGGCGAGATCGTCACCCTGATCGGCGCCAACGGCGCCGGCAAGTCGACCCTGCTAATGACGCTCTGC
GGCTCGCCGCAGGCGGCCAGCGGCAGCATCCGCTACGAAGGCGAGGAACTGGTCGGCCTGCCCTCCTCCACC
ATCATGCGCAAGAGCATCGCGGTGGTCCCGGAAGGCCGCCGGGTCTTCTCCCGCCTGACGGTGGAAGAAAAC
CTGGCGATGGGCGGCTTCTTCACCGACAAGGACGACTACCAGGTGCAGATGGACAAGGTGCTGGAACTCTTC
CCGCGCCTGAAGGAACGCTACGAACAGCGCGCCGGGACCATGTCCGGCGGCGAACAGCAGATGCTCGCCATC
GGCCGCGCGCTGATGAGCAAGCCAAAGCTGTTGCTGCTGGACGAACCTTCGCTCGGCCTGGCGCCGATCATC
ATCCAGCAGATCTTCGAGATCATCGAGCAGCTGCGTCGCGAAGGCGTCACCGTGTTCCTCGTCGAGCAGAAC
GCCAACCAGGCGTTGAAGCTCGCCGATCGCGCCTACGTGCTGGAGAACGGCCGGATCGTCATGCACGACACC
GGCGCCGCCCTGCTGACCAACCCGAAGGTGCGCGACGCCTACCTCGGCGGCTGA
Translation:
MLSFDKVSTYYGKIQALHDVSVEVKKGEIVTLIGANGAGKSTLLMTLCGSPQAASGSIRYEGEELVGLPSST
IMRKSIAVVPEGRRVFSRLTVEENLAMGGFFTDKDDYQVQMDKVLELFPRLKERYEQRAGTMSGGEQQMLAI
GRALMSKPKLLLLDEPSLGLAPIIIQQIFEIIEQLRREGVTVFLVEQNANQALKLADRAYVLENGRIVMHDT
GAALLTNPKVRDAYLGG*
AnnotationID:3506GeneID:3498
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 17:05:18
Gene Name:braG
Confidence Code:1
GeneProduct:branched-chain amino acid transport protein BraG
Cell Localization:(5) Inner membrane-associated
Synonyms:PA1070
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0410
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component. Score: 335, 3e-93
COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component. Score: 180, 1e-46






   
Genomic Context:
Adjacent to genes BraC, BraD, BraE, and BraF, reported to constitute a 
transport system for branched-chain amino acids 






   
Comment:


















    ReferenceID:6999




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24141




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3498
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5576
                           PA1070_tr
                           translation of PA1070
                           233
                           99.99
                           99.99
                           0
                           1157.0
     

     
     
155544
                           dbj|BAA14258.1|
                           (D90223) peripheral membrane protein [Pseudomonas aeruginosa]
                           233
                           99.99
                           99.99
                           0
                           1157.0
     

     
     
155543
                           gb|AAG04459.1|AE004539_1
                           (AE004539) branched-chain amino acid transport protein BraG [Pseudomonas aeruginosa PAO1]
                           233
                           99.99
                           99.99
                           0
                           1157.0
     

     
     
155545
                           gb|AAR19313.1|
                           (AY426537) putative branched-chain amino acid transporter ATP-binding protein [symbiont bacterium of Paederus fuscipes]
                           239
                           89.53
                           94.56
                           6
                           1072.0
     

     
     
155546
                           gb|AAN66762.1|AE016304_7
                           (AE016778) branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           233
                           87.55
                           93.56
                           0
                           1023.0
     

     






      

          
GC ORFID: 46500How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1070Glimmer Score: 

          
Start: 462636Stop: 461935

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1070 translation of PA1070Homolog Bit Score 450.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6077 (ORF: BLASTX 395.0), t_PA4909 (ORF: BLASTX 267.0), t_PA4862 (ORF: BLASTX 176.0), psyr_15may02_Scaffold4_revised_gene5801 (ORF: BLASTX 163.0), psyr_15may02_Scaffold2_revised_gene3454 (ORF: BLASTX 147.0), t_PA1070 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAGTTTCGACAAGGTTTCCACCTACTACGGCAAGATCCAGGCGCTGCACGACGTCAGCGTGGAAGTG 
AAGAAGGGCGAGATCGTCACCCTGATCGGCGCCAACGGCGCCGGCAAGTCGACCCTGCTAATGACGCTCTGC 
GGCTCGCCGCAGGCGGCCAGCGGCAGCATCCGCTACGAAGGCGAGGAACTGGTCGGCCTGCCCTCCTCCACC 
ATCATGCGCAAGAGCATCGCGGTGGTCCCGGAAGGCCGCCGGGTCTTCTCCCGCCTGACGGTGGAAGAAAAC 
CTGGCGATGGGCGGCTTCTTCACCGACAAGGACGACTACCAGGTGCAGATGGACAAGGTGCTGGAACTCTTC 
CCGCGCCTGAAGGAACGCTACGAACAGCGCGCCGGGACCATGTCCGGCGGCGAACAGCAGATGCTCGCCATC 
GGCCGCGCGCTGATGAGCAAGCCAAAGCTGTTGCTGCTGGACGAACCTTCGCTCGGCCTGGCGCCGATCATC 
ATCCAGCAGATCTTCGAGATCATCGAGCAGCTGCGTCGCGAAGGCGTCACCGTGTTCCTCGTCGAGCAGAAC 
GCCAACCAGGCGTTGAAGCTCGCCGATCGCGCCTACGTGCTGGAGAACGGCCGGATCGTCATGCACGACACC 
GGCGCCGCCCTGCTGACCAACCCGAAGGTGCGCGACGCCTACCTCGGCGGCTGA