ViewGene
Locus Name:
GeneID:
Location:

GeneID:349
TrivialName: PA14_73110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73110
PAO1 Ortholog Locus:PA5544
Sequence Length:2025
Protein Length:674
Start: 6511495
Stop: 6509471
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08929.1|AE004966_11 (AE004966) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 670/674 (99%), Positives = 671/674 (99%)
Sequence:
ATGAGCGATCATCAGAACGGGCTGCACCTCGAGGCGGAAAACTGGCCGCGCGCGCTGTTCGCCGTGGCCCTG
GCCTTTTCCGTGTTCCAGGTCGTCACCGCGGCCTTTCCCCTGATTTCCACCCAGGTCCTGCGGGCAATGCAC
GTCGGACTGCTGTTGCTGGTGGTGTACATCAGCTATCCCGCCTTCGGCATACGTCGCCCCTGGCAGCCGTTG
GCCTGGTTGCTGGGCATGGCCGGCCTGGGCACGGCGGTCTACCAGTGGGTTTTCGAGGCCGACCTGATCCAG
CGCTCCGGAGAGCTGACCCAGGCCGACATGGTCGTCGGCGTGGTGCTGATCGTCCTGGTCTTCGAGGCGGCG
CGACGGGTGATGGGCATCGCCTTGCCGATCATCTGCGCGCTGTTTCTTGCCTATGGCCTGTTCGGCGAACAC
CTGCCGGGCGACCTGGCCCACCGCGGCTACGGCTTTGACCAGATCGTCAACCAGCTGTCGTTCGGTACCGAA
GGTCTCTACGGCACGCCGACCTACGTGTCGGCAACCTACATCTATCTGTTCATCCTGTTCGGCGCCTTCCTC
GAGCAGGCCGGCATGATCCGCCTGTTCACCGATTTCGCCATGGGCCTGTTCGGCCACCGGGTCGGCGGGCCG
GCCAAGGTCTCGGTATTCTCCTCGGCGCTGATGGGCACCATCACCGGCTCCGGCGTGGCCAACGTGGTCACC
ACCGGACAGTTCACCATCCCGCTGATGAAGCGTTTCGGCTACAAGCCGGCGTTCGCCGGCGGCGTCGAGGCG
ACCGCGAGCATGGGCAGCCAACTGATGCCGCCGGTGATGGGGGCGGTGGCGTTCATCATGGCCGAGACCATC
AACGTCCCCTACGTGGAGATCGCCAAGGCGGCGCTGATCCCGGCCTTGCTGTATTTCGGCTCGGTGTACTGG
ATGGTCCATCTCGAGGCCCGCCGGACCGACCTCAAGGGCCTGCCGCGCGAGCAGTGTCCGAGCGCCTGGGGT
GCCGTCCGCGAGCGCTGGTTCCTGCTGATTCCGTTGCTGGTGCTGATCGCGCTGCTGTTCTCCGGGCGCACG
CCGCTGTTCTCCGGAACCATTGGTCTGGCGCTGACCGCCATCGTCATCCTCGGTTCGGCGATCATCCTGCGG
GTGTCCTCGCTCGGCCTGCGCATCGCCTTCTGGGTGGCGCTGGGGCTGCTCTGCGCGGGGTTCTTCCGCCTC
GGCATCGGAGTGATCTTCGTTGTGATCGCGGCCCTGGCCCTGGCCTGCTGGTTCGTCCGTGGCGGCCGGGAA
ACCCTGCGCATCTGCGTCCGCGCCCTCGCAGAAGGTGCGCGACATGCGATTCCGGTGGGCATCGCCTGCACC
CTGGTGGGAGTCATCATCGGGGTGATTTCGCTGACCGGCATCGCCACCACCTTCGCCAGCTACGTGCTCGAC
CTGGGACGGGAGAACCTGCTGCTGTCGCTGGTCCTGACCATGGTCACCTGCCTGGTCCTGGGAATGGGCATC
CCGACCATCCCCAACTACATCATCACCAGCTCCATCGCCGCGCCGGCGCTGCTGGAACTGGGGGTGCCGCTG
ATCGTCTCGCACATGTTCGTCTTCTACTTCGGCATCCTCGCCGACCTCACCCCTCCGGTGGCGCTGGCCTGC
TTCGCGGCGGCGCCGATCGCCAAGGAAAGGGGATTGAAGATCAGCTTCTGGGCGGTGCGCATCGCCCTGGCG
GGTTTCGTGGTGCCGTTCATGGCGGTGTATTCCCCGGCGCTGATGCTGCAGGAAGGCGGTTGGGGGGCGACG
CTCTATGTCACCTGCAAGGCGGTGCTGGCCATCGGCCTGTGGGGCATGGCTTCCATCGGCTACCTGCAGGGG
CCGCTGGCCTGGTGGGAGCGCCTGGTGGCGTTCGCCGCGGGAGCCAGCCTGGTCCTGGCCTTGCCGATCAGC
GACGAGCTGGGCTTCGTCCTCGGCGCGCTGGTGATCGGCTGGCACCTCTGGCGCCAGCGTGCGCGCGAGGCG
GTGGCGTGA
Translation:
MSDHQNGLHLEAENWPRALFAVALAFSVFQVVTAAFPLISTQVLRAMHVGLLLLVVYISYPAFGIRRPWQPL
AWLLGMAGLGTAVYQWVFEADLIQRSGELTQADMVVGVVLIVLVFEAARRVMGIALPIICALFLAYGLFGEH
LPGDLAHRGYGFDQIVNQLSFGTEGLYGTPTYVSATYIYLFILFGAFLEQAGMIRLFTDFAMGLFGHRVGGP
AKVSVFSSALMGTITGSGVANVVTTGQFTIPLMKRFGYKPAFAGGVEATASMGSQLMPPVMGAVAFIMAETI
NVPYVEIAKAALIPALLYFGSVYWMVHLEARRTDLKGLPREQCPSAWGAVRERWFLLIPLLVLIALLFSGRT
PLFSGTIGLALTAIVILGSAIILRVSSLGLRIAFWVALGLLCAGFFRLGIGVIFVVIAALALACWFVRGGRE
TLRICVRALAEGARHAIPVGIACTLVGVIIGVISLTGIATTFASYVLDLGRENLLLSLVLTMVTCLVLGMGI
PTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPIAKERGLKISFWAVRIALA
GFVVPFMAVYSPALMLQEGGWGATLYVTCKAVLAIGLWGMASIGYLQGPLAWWERLVAFAAGASLVLALPIS
DELGFVLGALVIGWHLWRQRAREAVA*
AnnotationID:358GeneID:349
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:27
Gene Name:
Confidence Code:3
GeneProduct:putative transport protein
Cell Localization:()
Synonyms:PA5544
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4666
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69549.1|AE016588_6 (AE016788) transporter, putative [Pseudomonas putida KT2440]
          Length = 675

 Score = 1125 bits (2910), Expect = 0.0
 Identities = 556/668 (83%), Positives = 603/668 (90%)








 
Structural Features:
COG4666, COG4666, TRAP-type uncharacterized transport system, 
fused permease components 
CD-Length = 642 residues,  98.6% aligned
Score =  582 bits (1501), Expect = 5e-167
Identities = 313/675 (46%), Positives = 407/675 (60%), Gaps = 43/675 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:701




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17843




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33284




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:349_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:349
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
582
                           PA5544_tr
                           translation of PA5544
                           674
                           99.40
                           99.55
                           0
                           3409.0
     

     
     
27997
                           gb|AAG08929.1|AE004966_11
                           (AE004966) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           674
                           99.40
                           99.55
                           0
                           3409.0
     

     
     
27998
                           gb|AAN69549.1|AE016588_6
                           (AE016788) transporter, putative [Pseudomonas putida KT2440]
                           675
                           82.66
                           89.77
                           1
                           2904.0
     

     
     
27999
                           gb|AAN53537.1|AE015494_5
                           (AE015494) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           677
                           75.33
                           86.85
                           3
                           2718.0
     

     
     
28001
                           dbj|BAC46567.1|
                           (AP005939) blr1302 [Bradyrhizobium japonicum USDA 110]
                           703
                           53.62
                           69.27
                           30
                           1866.0
     

     






      

          
GC ORFID: 43351How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5544Glimmer Score: 

          
Start: 5775184Stop: 5773160

          
Length: 2025


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5544 translation of PA5544Homolog Bit Score 1317.0

          
Other Homologs:  t_PA5544 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATCATCAGAACGGGCTGCACCTCGAGGCGGAAAACTGGCCGCGCGCGCTGTTCGCCGTGGCCCTG 
GCCTTTTCCGTGTTCCAGGTCGTCACCGCGGCCTTTCCCCTGATTTCCACCCAGGTCCTGCGGGCAATGCAC 
GTCGGACTGCTGTTGCTGGTGGTGTACATCAGCTATCCCGCCTTCGGCATACGTCGCCCCTGGCAGCCGTTG 
GCCTGGTTGCTGGGCATGGCCGGCCTGGGCACGGCGGTCTACCAGTGGGTTTTCGAGGCCGACCTGATCCAG 
CGCTCCGGAGAGCTGACCCAGGCCGACATGGTCGTCGGCGTGGTGCTGATCGTCCTGGTCTTCGAGGCGGCG 
CGACGGGTGATGGGCATCGCCTTGCCGATCATCTGCGCGCTGTTTCTTGCCTATGGCCTGTTCGGCGAACAC 
CTGCCGGGCGACCTGGCCCACCGCGGCTACGGCTTTGACCAGATCGTCAACCAGCTGTCGTTCGGTACCGAA 
GGTCTCTACGGCACGCCGACCTACGTGTCGGCAACCTACATCTATCTGTTCATCCTGTTCGGCGCCTTCCTC 
GAGCAGGCCGGCATGATCCGCCTGTTCACCGATTTCGCCATGGGCCTGTTCGGCCACCGGGTCGGCGGGCCG 
GCCAAGGTCTCGGTATTCTCCTCGGCGCTGATGGGCACCATCACCGGCTCCGGCGTGGCCAACGTGGTCACC 
ACCGGACAGTTCACCATCCCGCTGATGAAGCGTTTCGGCTACAAGCCGGCGTTCGCCGGCGGCGTCGAGGCG 
ACCGCGAGCATGGGCAGCCAACTGATGCCGCCGGTGATGGGGGCGGTGGCGTTCATCATGGCCGAGACCATC 
AACGTCCCCTACGTGGAGATCGCCAAGGCGGCGCTGATCCCGGCCTTGCTGTATTTCGGCTCGGTGTACTGG 
ATGGTCCATCTCGAGGCCCGCCGGACCGACCTCAAGGGCCTGCCGCGCGAGCAGTGTCCGAGCGCCTGGGGT 
GCCGTCCGCGAGCGCTGGTTCCTGCTGATTCCGTTGCTGGTGCTGATCGCGCTGCTGTTCTCCGGGCGCACG 
CCGCTGTTCTCCGGAACCATTGGTCTGGCGCTGACCGCCATCGTCATCCTCGGTTCGGCGATCATCCTGCGG 
GTGTCCTCGCTCGGCCTGCGCATCGCCTTCTGGGTGGCGCTGGGGCTGCTCTGCGCGGGGTTCTTCCGCCTC 
GGCATCGGAGTGATCTTCGTTGTGATCGCGGCCCTGGCCCTGGCCTGCTGGTTCGTCCGTGGCGGCCGGGAA 
ACCCTGCGCATCTGCGTCCGCGCCCTCGCAGAAGGTGCGCGACATGCGATTCCGGTGGGCATCGCCTGCACC 
CTGGTGGGAGTCATCATCGGGGTGATTTCGCTGACCGGCATCGCCACCACCTTCGCCAGCTACGTGCTCGAC 
CTGGGACGGGAGAACCTGCTGCTGTCGCTGGTCCTGACCATGGTCACCTGCCTGGTCCTGGGAATGGGCATC 
CCGACCATCCCCAACTACATCATCACCAGCTCCATCGCCGCGCCGGCGCTGCTGGAACTGGGGGTGCCGCTG 
ATCGTCTCGCACATGTTCGTCTTCTACTTCGGCATCCTCGCCGACCTCACCCCTCCGGTGGCGCTGGCCTGC 
TTCGCGGCGGCGCCGATCGCCAAGGAAAGGGGATTGAAGATCAGCTTCTGGGCGGTGCGCATCGCCCTGGCG 
GGTTTCGTGGTGCCGTTCATGGCGGTGTATTCCCCGGCGCTGATGCTGCAGGAAGGCGGTTGGGGGGCGACG 
CTCTATGTCACCTGCAAGGCGGTGCTGGCCATCGGCCTGTGGGGCATGGCTTCCATCGGCTACCTGCAGGGG 
CCGCTGGCCTGGTGGGAGCGCCTGGTGGCGTTCGCCGCGGGAGCCAGCCTGGTCCTGGCCTTGCCGATCAGC 
GACGAGCTGGGCTTCGTCCTCGGCGCGCTGGTGATCGGCTGGCACCTCTGGCGCCAGCGTGCGCGCGAGGCG 
GTGGCGTGA