ViewGene
Locus Name:
GeneID:
Location:

GeneID:3489
TrivialName: PA14_11660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11660
PAO1 Ortholog Locus:PA4034
Sequence Length:690
Protein Length:229
Start: 1011554
Stop: 1010865
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07421.1|AE004820_6 (AE004820) aquaporin Z [Pseudomonas aeruginosa PAO1]
Identities = 229/229 (100%), Positives = 229/229 (100%)
Sequence:
ATGAAGCAATACGGAGCAGAGTTCTTCGGCACCTTCTGGCTGGTATTGGGCGGCTGCGGCAGCGCAGTACTC
GCTGCCGGCGTACCGGAACTGGGAATCGGCTACCTCGGCGTGGCCCTGGCGTTCGGCCTCAGCGTGCTGACC
ATGGCCTATGCCATCGGCCCGATCTCCGGCGCACACCTGAACCCCGCGGTATCGGTAGGCCTGTGGGTCGGC
GGGCGCTTCCCGGCCAGCCAACTGCTGCCCTATGTCGTCGCCCAGGTCCTCGGTGGCCTCGCCGCCGGCGGC
GTGCTGTACCTGATCGCCAGCGGCAAGGCCGGCTTCGACCTAGCCGCCGGCTTCGCCTCCAATGGCTACGGC
GAACACTCGCCGGGCGGCTACTCGTTGCAAGCCGCGCTGGTCAGCGAAGTGGTACTTACCGGCATGTTCCTG
CTGATCATCCTCGGCGCCACCTCCAAGCGCGCGCCGCAGGGCTTCGCGCCGATCGCCATCGGCCTGACCCTG
ACCCTGATCCACCTGATCAGCATCCCGGTCACCAACACCTCGGTGAACCCGGCGCGCAGCACCGCGGTCGCC
CTGTACGTCGGCGACTGGGCGGTTTCCCAGCTGTGGCTGTTCTGGGTCGCGCCGATTCTCGGTGCGGTACTC
GGCGCCCTGGCCTATCGCCTGATCGGCGACAAGAACGACTGA
Translation:
MKQYGAEFFGTFWLVLGGCGSAVLAAGVPELGIGYLGVALAFGLSVLTMAYAIGPISGAHLNPAVSVGLWVG
GRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNGYGEHSPGGYSLQAALVSEVVLTGMFL
LIILGATSKRAPQGFAPIAIGLTLTLIHLISIPVTNTSVNPARSTAVALYVGDWAVSQLWLFWVAPILGAVL
GALAYRLIGDKND*
AnnotationID:3497GeneID:3489
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 15:03:12
Gene Name:aqpZ
Confidence Code:2
GeneProduct:aquaporin Z
Cell Localization:(6) Outer membrane protein
Synonyms:bniP
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0580,cd00333,KOG0223,pfam00230,KOG0224
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|10450 COG0580, GlpF, Glycerol uptake facilitator and related permeases
(Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Length = 241
Score =  182 bits (463), Expect = 7e-47
Identities = 110/234 (47%), Positives = 135/234 (57%), Gaps = 10/234 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6981




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24123




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34624




  
Author/Investigator(s):
        Calamita G, Bishai WR, Preston GM, Guggino WB, Agre P.





  
Title:
        Molecular cloning and characterization of AqpZ, a water channel from Escherichia coli.




  
PubMed:
        7493926


MedLine:
        




    
Source:
J Biol Chem. 1995 Dec 8;270(49):29063-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7493926

















    ReferenceID:34625




  
Author/Investigator(s):
        Ringler P, Borgnia MJ, Stahlberg H, Maloney PC, Agre P, Engel A.





  
Title:
        Structure of the water channel AqpZ from Escherichia coli revealed by electron crystallography.




  
PubMed:
        10518953


MedLine:
        




    
Source:
J Mol Biol. 1999 Sep 3;291(5):1181-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10518953&itool=iconabstr









           
Homologs By Global Alignment 

           

       



     
Gene ID:3489
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5565
                           PA4034_tr
                           translation of PA4034
                           229
                           99.99
                           99.99
                           0
                           1164.0
     

     
     
155204
                           gb|AAG07421.1|AE004820_6
                           (AE004820) aquaporin Z [Pseudomonas aeruginosa PAO1]
                           229
                           99.99
                           99.99
                           0
                           1164.0
     

     
     
155205
                           gb|AAQ60532.1|
                           (AE016920) aquaporin Z, transmembrane water channel [Chromobacterium violaceum ATCC 12472]
                           229
                           79.47
                           87.33
                           0
                           954.0
     

     
     
155206
                           gb|AAO10407.1|AE016803_194
                           (AE016803) Probable transmembrane water channel; aquaporin Z [Vibrio vulnificus CMCP6]
                           231
                           76.62
                           88.31
                           2
                           931.0
     

     
     
155208
                           dbj|BAC60439.1|
                           (AP005080) aquaporin Z [Vibrio parahaemolyticus]
                           232
                           76.29
                           88.79
                           3
                           924.0
     

     






      

          
GC ORFID: 46491How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4034Glimmer Score: 

          
Start: 3942383Stop: 3943072

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4034 translation of PA4034Homolog Bit Score 452.0

          
Other Homologs:  t_PA4034 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCAATACGGAGCAGAGTTCTTCGGCACCTTCTGGCTGGTATTGGGCGGCTGCGGCAGCGCAGTACTC 
GCTGCCGGCGTACCGGAACTGGGAATCGGCTACCTCGGCGTGGCCCTGGCGTTCGGCCTCAGCGTGCTGACC 
ATGGCCTATGCCATCGGCCCGATCTCCGGCGCACACCTGAACCCCGCGGTATCGGTAGGCCTGTGGGTCGGC 
GGGCGCTTCCCGGCCAGCCAACTGCTGCCCTATGTCGTCGCCCAGGTCCTCGGTGGCCTCGCCGCCGGCGGC 
GTGCTGTACCTGATCGCCAGCGGCAAGGCCGGCTTCGACCTAGCCGCCGGCTTCGCCTCCAATGGCTACGGC 
GAACACTCGCCGGGCGGCTACTCGTTGCAAGCCGCGCTGGTCAGCGAAGTGGTACTTACCGGCATGTTCCTG 
CTGATCATCCTCGGCGCCACCTCCAAGCGCGCGCCGCAGGGCTTCGCGCCGATCGCCATCGGCCTGACCCTG 
ACCCTGATCCACCTGATCAGCATCCCGGTCACCAACACCTCGGTGAACCCGGCGCGCAGCACCGCGGTCGCC 
CTGTACGTCGGCGACTGGGCGGTTTCCCAGCTGTGGCTGTTCTGGGTCGCGCCGATTCTCGGTGCGGTACTC 
GGCGCCCTGGCCTATCGCCTGATCGGCGACAAGAACGACTGA