ViewGene
Locus Name:
GeneID:
Location:

GeneID:3476
TrivialName: PA14_52770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52770
PAO1 Ortholog Locus:PA0890
Sequence Length:699
Protein Length:232
Start: 4677821
Stop: 4677123
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04279.1|AE004523_7 (AE004523) arginine/ornithine transport protein AotM [Pseudomonas aeruginosa PAO1]
Identities = 232/232 (100%), Positives = 232/232 (100%)
Sequence:
GTGATCTTCGATTTCTCCGTCATCTGGGACAGCCTTCCGCTCTATTTCGACGGCCTGCTGGTCACCCTCAAG
CTGCTCTCGATCTCCCTGCTGATCGGCTTGCTGCTGGCGGTGCCGCTGGCGCTGATGCGGGTCTCCAAGCAG
CCGCTGGTGAACTTCCCGGCCTGGCTCTACACCTACGTGATCCGCGGCACGCCGATGCTGGTCCAGCTGTTC
CTGATCTACTACGGCCTGGCGCAGTTCGACGCGGTGCGCGAGAGCGCGCTGTGGCCCTGGCTGTCGAACGCG
TCCTTCTGCGCCTGCCTGGCGTTCGCCATCAACACCAGCGCCTACACCGCCGAGATCCTCGCCGGCAGCCTG
AAGGCCACGCCCCATGGCGAGATCGAGGCGGCCAAGGCGATGGGCATGTCGCGCCTGAAGATGTACCGCCGC
ATCCTCCTGCCGTCGGCACTGCGGCGCGCCCTGCCGCAGTACAGCAACGAAGTGATCATGATGCTGCAGACC
ACCAGCCTGGCGTCCATCGTCACCCTGGTGGACATCACCGGCGCCGCGCGGACCGTCTACTCGCAGTACTAC
CTGCCGTTCGAGGCGTTCATCACCGCCGGCCTGTTCTACCTGTGCCTGACCTTCATCCTGGTGCGCCTGTTC
AAGCTTGCCGAGCGCCGCTGGCTGGCCTACCTGGCGCCGCGCAAATCCTGA
Translation:
MIFDFSVIWDSLPLYFDGLLVTLKLLSISLLIGLLLAVPLALMRVSKQPLVNFPAWLYTYVIRGTPMLVQLF
LIYYGLAQFDAVRESALWPWLSNASFCACLAFAINTSAYTAEILAGSLKATPHGEIEAAKAMGMSRLKMYRR
ILLPSALRRALPQYSNEVIMMLQTTSLASIVTLVDITGAARTVYSQYYLPFEAFITAGLFYLCLTFILVRLF
KLAERRWLAYLAPRKS*
AnnotationID:3484GeneID:3476
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 16:04:40
Gene Name:aotM
Confidence Code:1
GeneProduct:arginine/ornithine transport protein AotM
Cell Localization:(4) Inner membrane protein
Synonyms:PA0890
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4160, COG0765
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4160, ArtM, ABC-type arginine/histidine transport system, permease component. Score: 286, 4e-78
COG0765, HisM, ABC-type amino acid transport system, permease component. Score: 179, 7e-46






   
Genomic Context:
Arginine-ornithine transport locus, adjacent to arginine-ornithine catabolic locus 






   
Comment:


















    ReferenceID:14855




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24097




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31999




  
Author/Investigator(s):
        Nishijyo T, Park SM, Lu CD, Itoh Y, Abdelal AT.






  
Title:
        Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa.





  
PubMed:
        99008987


MedLine:
        




    
Source:
J Bacteriol. 1998 Nov;180(21):5559-66






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3476
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5537
                           PA0890_tr
                           translation of PA0890
                           232
                           99.99
                           99.99
                           0
                           1169.0
     

     
     
154295
                           gb|AAC71072.1|
                           (AF012537) membrane protein [Pseudomonas aeruginosa]
                           232
                           99.56
                           99.99
                           0
                           1166.0
     

     
     
154294
                           gb|AAG04279.1|AE004523_7
                           (AE004523) arginine/ornithine transport protein AotM [Pseudomonas aeruginosa PAO1]
                           232
                           99.56
                           99.99
                           0
                           1166.0
     

     
     
154296
                           gb|AAO55347.1|
                           (AE016862) arginine/ornithine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           232
                           85.77
                           93.96
                           0
                           1029.0
     

     
     
154297
                           gb|AAN70059.1|AE016645_5
                           (AE016790) basic amino acid ABC transporter, permease protein [Pseudomonas putida KT2440]
                           232
                           84.48
                           93.53
                           0
                           1026.0
     

     






      

          
GC ORFID: 46478How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0890Glimmer Score: 

          
Start: 276086Stop: 276784

          
Length: 699


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0890 translation of PA0890Homolog Bit Score 454.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7810 (ORF: BLASTX 398.0), psyr_15may02_Scaffold6_revised_gene6953 (ORF: BLASTX 220.0), t_PA2925 (ORF: BLASTX 209.0), psyr_15may02_Scaffold5_revised_gene6101 (ORF: BLASTX 201.0), t_PA5155 (ORF: BLASTX 200.0), t_PA0890 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCTTCGATTTCTCCGTCATCTGGGACAGCCTTCCGCTCTATTTCGACGGCCTGCTGGTCACCCTCAAG 
CTGCTCTCGATCTCCCTGCTGATCGGCTTGCTGCTGGCGGTGCCGCTGGCGCTGATGCGGGTCTCCAAGCAG 
CCGCTGGTGAACTTCCCGGCCTGGCTCTACACCTACGTGATCCGCGGCACGCCGATGCTGGTCCAGCTGTTC 
CTGATCTACTACGGCCTGGCGCAGTTCGACGCGGTGCGCGAGAGCGCGCTGTGGCCCTGGCTGTCGAACGCG 
TCCTTCTGCGCCTGCCTGGCGTTCGCCATCAACACCAGCGCCTACACCGCCGAGATCCTCGCCGGCAGCCTG 
AAGGCCACGCCCCATGGCGAGATCGAGGCGGCCAAGGCGATGGGCATGTCGCGCCTGAAGATGTACCGCCGC 
ATCCTCCTGCCGTCGGCACTGCGGCGCGCCCTGCCGCAGTACAGCAACGAAGTGATCATGATGCTGCAGACC 
ACCAGCCTGGCGTCCATCGTCACCCTGGTGGACATCACCGGCGCCGCGCGGACCGTCTACTCGCAGTACTAC 
CTGCCGTTCGAGGCGTTCATCACCGCCGGCCTGTTCTACCTGTGCCTGACCTTCATCCTGGTGCGCCTGTTC 
AAGCTTGCCGAGCGCCGCTGGCTGGCCTACCTGGCGCCGCGCAAATCCTGA