ViewGene
Locus Name:
GeneID:
Location:

GeneID:3411
TrivialName: PA14_20420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20420
PAO1 Ortholog Locus:PA3375
Sequence Length:717
Protein Length:238
Start: 1755728
Stop: 1756444
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06763.1|AE004759_10 (AE004759) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 237/238 (99%), Positives = 237/238 (99%)
Sequence:
ATGAACAACCTGATCGAGGTCCGCGACCTCAGCAAGACCTTCACCCTGCACCAGCAACAGGGCGTAGTGCTC
AATGTGCTGCGCGGGCTCAACTTCAATGTCGCCGGCGGCGAATGCCTGGTGCTCCACGGACGCTCCGGCGCC
GGCAAGAGCACCCTGCTGCGCACGCTCTACGGCAACTACCTGCCGGCCGGCGGCAGCATCCGCCTGCGCCAC
GCCGGCGACTGGCTGGAACTGGTCGGCGCCGAGCCTCGCGAGGTGCTCGCCGTGCGCCGCCAGACCCTCGGC
TACGTCAGCCAGTTCCTGCGGGTGATCCCGCGGGTGGCGACCCTCGACGTGGTCATGGAGCCGGCCCTGGCC
CGTGGCTGGAGCCGCGACAGCGCCGAACTGCGGGCGCGCAGCCTGCTGGCCCGGCTGAACATCCCGGAACGC
CTCTGGCAACTGGCGCCGGGCACCTTTTCCGGCGGCGAGCAGCAACGCGTCAACATTGCCCGCGGCTTCATG
GTCGAGTGGCCGATCCTGCTGCTCGACGAGCCGACCGCGTCCCTCGACGAAGCCAACCGCCAGGTAGTGCTG
GAACTGATCGGCGAAGCCAAGGGCGCCGGCGCCGCGTTGATCGGCATCTTCCACGACCGCGCCGCCCGCGAG
GCGGTGGCCAGCCGCTACCTGGACATGAGCCAGGAGCTTTCCCGCCAGGAGCAAGCCCATGTCGTCTGA
Translation:
MNNLIEVRDLSKTFTLHQQQGVVLNVLRGLNFNVAGGECLVLHGRSGAGKSTLLRTLYGNYLPAGGSIRLRH
AGDWLELVGAEPREVLAVRRQTLGYVSQFLRVIPRVATLDVVMEPALARGWSRDSAELRARSLLARLNIPER
LWQLAPGTFSGGEQQRVNIARGFMVEWPILLLDEPTASLDEANRQVVLELIGEAKGAGAALIGIFHDRAARE
AVASRYLDMSQELSRQEQAHVV*
AnnotationID:3419GeneID:3411
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:21
Gene Name:phnL
Confidence Code:3
GeneProduct:phosphonate ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:PA3375
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:HisP-like nucleotide binding protein (ATP-binding protein)
Functional Category Confidence Code:5
COGs:cd00267,pfam00005,COG4778
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56069.1| (AE016865) phosphonate ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 238

 Score =  359 bits (922), Expect = 7e-99
 Identities = 178/226 (78%), Positives = 201/226 (88%)

>gb|AAN83526.1|AE016771_37 (AE016771) Phosphonates transport ATP-binding protein phnL
           [Escherichia coli CFT073]
          Length = 226

 Score =  274 bits (700), Expect = 4e-73
 Identities = 134/218 (61%), Positives = 169/218 (77%)

>gb|AAM84311.1|AE013674_7 (AE013674) ATP-binding component of phosphonate ABC transporter
           [Yersinia pestis KIM]
          Length = 239

 Score =  273 bits (699), Expect = 5e-73
 Identities = 135/227 (59%), Positives = 172/227 (75%), Gaps = 1/227 (0%)






 
Structural Features:
cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues,  95.9% aligned
Score =  131 bits (331), Expect = 8e-32
Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 15/223 (6%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues,  99.5% aligned
Score =  138 bits (350), Expect = 4e-34
Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

COG4778, PhnL, ABC-type phosphonate transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 235 residues, 100.0% aligned
Score =  376 bits (968), Expect = 1e-105
Identities = 159/235 (67%), Positives = 184/235 (78%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6825




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23967




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32187




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3411_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3411
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5446
                           PA3375_tr
                           translation of PA3375
                           238
                           99.57
                           99.57
                           0
                           1193.0
     

     
     
151943
                           gb|AAG06763.1|AE004759_10
                           (AE004759) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           238
                           99.57
                           99.57
                           0
                           1193.0
     

     
     
151944
                           gb|AAO56069.1|
                           (AE016865) phosphonate ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           239
                           75.31
                           86.19
                           2
                           919.0
     

     
     
151960
                           gb|AAQ59515.1|
                           (AE016916) phosphonates transport ATP-binding protein phnL [Chromobacterium violaceum ATCC 12472]
                           240
                           57.91
                           69.16
                           7
                           652.0
     

     
     
151948
                           emb|CAC92691.1|
                           (AJ414157) phosphonates transport ATP-binding protein [Yersinia pestis CO92]
                           239
                           57.32
                           72.80
                           1
                           694.0
     

     






      

          
GC ORFID: 46413How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3375Glimmer Score: 

          
Start: 3198204Stop: 3197488

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3375 translation of PA3375Homolog Bit Score 464.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1225 (ORF: BLASTX 364.0), t_PA3375 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAACCTGATCGAGGTCCGCGACCTCAGCAAGACCTTCACCCTGCACCAGCAACAGGGCGTAGTGCTC 
AATGTGCTGCGCGGGCTCAACTTCAATGTCGCCGGCGGCGAATGCCTGGTGCTCCACGGACGCTCCGGCGCC 
GGCAAGAGCACCCTGCTGCGCACGCTCTACGGCAACTACCTGCCGGCCGGCGGCAGCATCCGCCTGCGCCAC 
GCCGGCGACTGGCTGGAACTGGTCGGCGCCGAGCCTCGCGAGGTGCTCGCCGTGCGCCGCCAGACCCTCGGC 
TACGTCAGCCAGTTCCTGCGGGTGATCCCGCGGGTGGCGACCCTCGACGTGGTCATGGAGCCGGCCCTGGCC 
CGTGGCTGGAGCCGCGACAGCGCCGAACTGCGGGCGCGCAGCCTGCTGGCCCGGCTGAACATCCCGGAACGC 
CTCTGGCAACTGGCGCCGGGCACCTTTTCCGGCGGCGAGCAGCAACGCGTCAACATTGCCCGCGGCTTCATG 
GTCGAGTGGCCGATCCTGCTGCTCGACGAGCCGACCGCGTCCCTCGACGAAGCCAACCGCCAGGTAGTGCTG 
GAACTGATCGGCGAAGCCAAGGGCGCCGGCGCCGCGTTGATCGGCATCTTCCACGACCGCGCCGCCCGCGAG 
GCGGTGGCCAGCCGCTACCTGGACATGAGCCAGGAGCTTTCCCGCCAGGAGCAAGCCCATGTCGTCTGA