ViewGene
Locus Name:
GeneID:
Location:

GeneID:3378
TrivialName: PA14_05830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05830
PAO1 Ortholog Locus:
Sequence Length:1239
Protein Length:412
Start: 515965
Stop: 517203
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAB69684.1| (AL939106) putative transcriptional activator [Streptomyces coelicolor A3(2)]
Identities = 94/339 (27%), Positives = 121/339 (35%), Gaps = 46/339 (13%)
Sequence:
GTGAAAAAGCGCGCCGGGGTGTTGCTCGGTGGCTCAGAAGAATGCCTGGATGCCGGTCTGCGCGCGGCCGAG
GATCAGCGCGTGGACATCGTGGGTGCCCTCGTAGGTGTTCACCACTTCCAGGTTGACCAGGTGGCGGGCGAT
GCCGAACTCGTCGGAGATGCCGTTGCCGCCCAGCATGTCGCGGGCCAGGCGGGCGATGTCGAGGGCCTTGCC
GCAGCTGTTGCGCTTCATGATCGAGGTGATTTCCACCGCCGCGGTGCCTTCGTCCTTCATCCGCCCCAGGCG
CAGGCAGCCTTGCAGGGCCAGGGTGATCTCGGTCTGCATGTCGGCCAGCTTCTTCTGGATCAGTTGGTTGGC
GGCCAGCGGGCGGCCGAACTGCTGGCGGTCGAGCACGTACTGGCGGGCGGTGTGCCAGCAGAATTCGGCGGC
GCCCAGGGCGCCCCAGGAGATGCCGTAGCGCGCCGAGTTCAGGCAGGTGAACGGACCGCGCAGGCCGCGCAC
ctCGGGGAAGGCGTTCTCTTCCGGAACGAACACGTTGTCCATCACGATCTCGCCGGTGATCGAGGCGCGCAG
GCCGACCTTGCCATGGATCGCCGGGGCGCTCAGGCCTTCCCAGCCCTTCTCGAGGACGAAACCGCGGATCTG
CCCTTCGTCGTCCTTGGCCCAGACCACGAAGACGTCGGCGATCGGGCTGTTGGTGATCCACATCTTGCTGCC
GCTCAGGCGATAGCCGCCGTCGACCTTCTTCGCCCGGGTGACCATCGAGCCCGGGTCGGAACCGTGGTTCGG
CTCGGTCAGGCCGAAGCAGCCGATGTATTCGCCGCTGGCCAGCTTGGGCAGGTACTTCTGCCGGGTGGCTTC
GTTGCCGAATTCATGGATTGGCACCATCACCAGCGAGGACTGCACGCTCATCATCGAGCGATAGCCGGAGTC
GACGCGCTCGACTTCGCGAGCGATCAGGCCATAGCAGACGTAGTTGAGGCCGCTGCCGCCGTAGGCTTCGGG
AATGGTCGCGCCGAGCAGGCCGGTCTCGCCCATCTCGCGGAAGATCTTCGGGTCGGTCTGTTCGTGGCGGAA
GGCTTCGAGCACGCGCGGGGCCAGCTTGTCCTGGGCGAACTGCTGGGCGCTGTCGCGAACCATGCGCTCTTC
TTCGGTGAGCTGCTGGTCCAGCAGCAGGGGATCTTCCCAGTTGAAGCTAGCTTTGGTGGCCATGCGTACATC
CTCGTCAAGCGGTAG
Translation:
MKKRAGVLLGGSEECLDAGLRAAEDQRVDIVGALVGVHHFQVDQVAGDAELVGDAVAAQHVAGQAGDVEGLA
AAVALHDRGDFHRRGAFVLHPPQAQAALQGQGDLGLHVGQLLLDQLVGGQRAAELLAVEHVLAGGVPAEFGG
AQGAPGDAVARRVQAGERTAQAAHLGEGVLFRNEHVVHHDLAGDRGAQADLAMDRRGAQAFPALLEDETADL
PFVVLGPDHEDVGDRAVGDPHLAAAQAIAAVDLLRPGDHRARVGTVVRLGQAEAADVFAAGQLGQVLLPGGF
VAEFMDWHHHQRGLHAHHRAIAGVDALDFASDQAIADVVEAAAAVGFGNGRAEQAGLAHLAEDLRVGLFVAE
GFEHARGQLVLGELLGAVANHALFFGELLVQQQGIFPVEASFGGHAYILVKR*
AnnotationID:3386GeneID:3378
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14811




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23901




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 46380How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene2881Glimmer Score: 

          
Start: 6317307Stop: 6318545

          
Length: 1239


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene2881 related to: gi|18600990|ref|XP_085914.1| (XM_085914) similar to glutaryl-Coenzyme A dehydrogenase (H. sapiens) [Homo sapiens]Homolog Bit Score 471.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGAAAAAGCGCGCCGGGGTGTTGCTCGGTGGCTCAGAAGAATGCCTGGATGCCGGTCTGCGCGCGGCCGAG 
GATCAGCGCGTGGACATCGTGGGTGCCCTCGTAGGTGTTCACCACTTCCAGGTTGACCAGGTGGCGGGCGAT 
GCCGAACTCGTCGGAGATGCCGTTGCCGCCCAGCATGTCGCGGGCCAGGCGGGCGATGTCGAGGGCCTTGCC 
GCAGCTGTTGCGCTTCATGATCGAGGTGATTTCCACCGCCGCGGTGCCTTCGTCCTTCATCCGCCCCAGGCG 
CAGGCAGCCTTGCAGGGCCAGGGTGATCTCGGTCTGCATGTCGGCCAGCTTCTTCTGGATCAGTTGGTTGGC 
GGCCAGCGGGCGGCCGAACTGCTGGCGGTCGAGCACGTACTGGCGGGCGGTGTGCCAGCAGAATTCGGCGGC 
GCCCAGGGCGCCCCAGGAGATGCCGTAGCGCGCCGAGTTCAGGCAGGTGAACGGACCGCGCAGGCCGCGCAC 
ctCGGGGAAGGCGTTCTCTTCCGGAACGAACACGTTGTCCATCACGATCTCGCCGGTGATCGAGGCGCGCAG 
GCCGACCTTGCCATGGATCGCCGGGGCGCTCAGGCCTTCCCAGCCCTTCTCGAGGACGAAACCGCGGATCTG 
CCCTTCGTCGTCCTTGGCCCAGACCACGAAGACGTCGGCGATCGGGCTGTTGGTGATCCACATCTTGCTGCC 
GCTCAGGCGATAGCCGCCGTCGACCTTCTTCGCCCGGGTGACCATCGAGCCCGGGTCGGAACCGTGGTTCGG 
CTCGGTCAGGCCGAAGCAGCCGATGTATTCGCCGCTGGCCAGCTTGGGCAGGTACTTCTGCCGGGTGGCTTC 
GTTGCCGAATTCATGGATTGGCACCATCACCAGCGAGGACTGCACGCTCATCATCGAGCGATAGCCGGAGTC 
GACGCGCTCGACTTCGCGAGCGATCAGGCCATAGCAGACGTAGTTGAGGCCGCTGCCGCCGTAGGCTTCGGG 
AATGGTCGCGCCGAGCAGGCCGGTCTCGCCCATCTCGCGGAAGATCTTCGGGTCGGTCTGTTCGTGGCGGAA 
GGCTTCGAGCACGCGCGGGGCCAGCTTGTCCTGGGCGAACTGCTGGGCGCTGTCGCGAACCATGCGCTCTTC 
TTCGGTGAGCTGCTGGTCCAGCAGCAGGGGATCTTCCCAGTTGAAGCTAGCTTTGGTGGCCATGCGTACATC 
CTCGTCAAGCGGTAG