ViewGene
Locus Name:
GeneID:
Location:

GeneID:3372
TrivialName: PA14_49290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49290
PAO1 Ortholog Locus:PA1170
Sequence Length:735
Protein Length:244
Start: 4378497
Stop: 4379231
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04559.1|AE004547_5 (AE004547) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 241/244 (98%), Positives = 242/244 (99%)
Sequence:
TTGATCCACTGGTTGAGCGACCCGACGTTCTGGACAGCCCTGCTGCAGATCGTCGCCATCGATATCCTCCTG
GGCGGCGACAATGCCGTAGTCATCGCCCTCGCCTGCCGGCACCTGCCGGCGCACCGGCGCAAGCAGGCGATC
TTCGGCGGCGTCGCCGGCGCCATCCTGATCCGCATCCTGCTGCTGTTCTTCGCCCTGCACCTGCTCGACCTG
CCCTACCTCAAGGTGATCGGCGCGCTCCTGCTGCTGTGGATCGGCATCAAGCTGCTGCTGCCGGAGGAGGAG
GACGGCGACGACATCAAGGGCAGCACCCACCTGCTCGGCGCGATCAAGACCATCATCATCGCCGACGCGGTG
ATGAGCCTGGACAACGTCATCGCCCTGTCCGCCGCCTCGGCCGGGGATTTCTTCCTGGTCTCCCTGGGCGTG
CTGATCAGCATCCCGATCATCGTCTGGGGCAGCCAACTGATCCTGCGCCTGATCGACCGCTTCCCGCTGATC
ATCCTCTTCGGCGGCGGCCTGCTCGGCTGGATCGCCGGCGGCATGCTGCTCACCGACAGCGCGCTGAAACCC
TGGCTGGCGCCCTACGCACAATGGGATTCCTACCTGCACTACGGTGCGGCGGCCTTCGGCGCGCTGTTCGTG
ATCCTCCTCGGCAGCCTCCTGGCGCGCCGCCAGTTGAAGCAGCGGCATGCCGCGCCGACGGCCGCCGCCGAA
AGCGAAGGCCGCTAA
Translation:
MIHWLSDPTFWTALLQIVAIDILLGGDNAVVIALACRHLPAHRRKQAIFGGVAGAILIRILLLFFALHLLDL
PYLKVIGALLLLWIGIKLLLPEEEDGDDIKGSTHLLGAIKTIIIADAVMSLDNVIALSAASAGDFFLVSLGV
LISIPIIVWGSQLILRLIDRFPLIILFGGGLLGWIAGGMLLTDSALKPWLAPYAQWDSYLHYGAAAFGALFV
ILLGSLLARRQLKQRHAAPTAAAESEGR*
AnnotationID:3380GeneID:3372
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 15:03:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0861
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
Six predicted transmembrane domains.






   
Genomic Context:






   
Comment:


















    ReferenceID:14805




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16972




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1170_CDS.cgi


    		




 
URL:

















    ReferenceID:23889




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3372
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5402
                           PA1170_tr
                           translation of PA1170
                           244
                           98.77
                           99.18
                           0
                           1213.0
     

     
     
151107
                           gb|AAG04559.1|AE004547_5
                           (AE004547) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           244
                           98.36
                           99.18
                           0
                           1211.0
     

     
     
151111
                           emb|CAD86205.1|
                           (BX321864) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           249
                           53.81
                           68.67
                           15
                           609.0
     

     
     
151114
                           emb|CAE41934.1|
                           (BX640416) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           254
                           51.18
                           66.92
                           19
                           598.0
     

     
     
151113
                           emb|CAE38055.1|
                           (BX640431) putative membrane protein [Bordetella parapertussis]
                           254
                           51.18
                           66.92
                           19
                           599.0
     

     






      

          
GC ORFID: 46374How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1170Glimmer Score: 

          
Start: 575411Stop: 574677

          
Length: 735


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1170 translation of PA1170Homolog Bit Score 471.0

          
Other Homologs:  t_PA1170 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGATCCACTGGTTGAGCGACCCGACGTTCTGGACAGCCCTGCTGCAGATCGTCGCCATCGATATCCTCCTG 
GGCGGCGACAATGCCGTAGTCATCGCCCTCGCCTGCCGGCACCTGCCGGCGCACCGGCGCAAGCAGGCGATC 
TTCGGCGGCGTCGCCGGCGCCATCCTGATCCGCATCCTGCTGCTGTTCTTCGCCCTGCACCTGCTCGACCTG 
CCCTACCTCAAGGTGATCGGCGCGCTCCTGCTGCTGTGGATCGGCATCAAGCTGCTGCTGCCGGAGGAGGAG 
GACGGCGACGACATCAAGGGCAGCACCCACCTGCTCGGCGCGATCAAGACCATCATCATCGCCGACGCGGTG 
ATGAGCCTGGACAACGTCATCGCCCTGTCCGCCGCCTCGGCCGGGGATTTCTTCCTGGTCTCCCTGGGCGTG 
CTGATCAGCATCCCGATCATCGTCTGGGGCAGCCAACTGATCCTGCGCCTGATCGACCGCTTCCCGCTGATC 
ATCCTCTTCGGCGGCGGCCTGCTCGGCTGGATCGCCGGCGGCATGCTGCTCACCGACAGCGCGCTGAAACCC 
TGGCTGGCGCCCTACGCACAATGGGATTCCTACCTGCACTACGGTGCGGCGGCCTTCGGCGCGCTGTTCGTG 
ATCCTCCTCGGCAGCCTCCTGGCGCGCCGCCAGTTGAAGCAGCGGCATGCCGCGCCGACGGCCGCCGCCGAA 
AGCGAAGGCCGCTAA