ViewGene
Locus Name:
GeneID:
Location:

GeneID:3350
TrivialName: PA14_27920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27920
PAO1 Ortholog Locus:PA2800
Sequence Length:705
Protein Length:234
Start: 2416694
Stop: 2417398
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06188.1|AE004707_7 (AE004707) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/234 (99%), Positives = 233/234 (99%)
Sequence:
ATGCGCGCCCGCGGCGTGAACTGGATCGAACGTAGTGCCCGAATCCTGGCTTGCGCCAGCCTCGCATTGGCA
CCCACGCTGTCCCTGGCGGCCAGTGAAGAAGACCCTTGGGAAAGCATCAACCGTCCCATCTTCACCTTCAAC
GACACCCTGGACACCTATGCGCTGAAACCGCTGGCCCAGGGTTACCAGAAGGTCACCCCGAACTTCGTTCAG
GACGGCGTGCACAACTTCTTCAACAACCTCGGCGACGTGAAGAACCTGGCCAACAACCTGTTGCAGGCCAAG
TTCCACAATGCCGGCGTGGACACCAGCCGCCTGCTGTTCAACAGCACCTTCGGCCTGGCCGGCTTGATCGAC
GTGGCGACCCCGATGGGCCTGCAGCGCAACGACGAGGACTTCGGCCAGACCCTGGGTTATTGGGGCGTCGGC
AGCGGCCCGTACGTGATGCTGCCGTTCCTCGGCCCGAGCACGCTGCGCGATGCCCCGGCGAAGATCCCGGAC
ATCTATGTCGGTCCCTACCACTACATGGACGATGTACGCGCGCGCAACGTGATGTTCGGCATCAACACCGTC
GACACCCGTGCCAACCTGCTGAAGTCGGAAAAACTGATCAGCGGCGACAAGTACATCTTCATCCGCAACGCC
TACCTGCAGAACCGCGAGTTCAAGGTCAAGGACGGCGAGGTGGAGGACGACTTCTAA
Translation:
MRARGVNWIERSARILACASLALAPTLSLAASEEDPWESINRPIFTFNDTLDTYALKPLAQGYQKVTPNFVQ
DGVHNFFNNLGDVKNLANNLLQAKFHNAGVDTSRLLFNSTFGLAGLIDVATPMGLQRNDEDFGQTLGYWGVG
SGPYVMLPFLGPSTLRDAPAKIPDIYVGPYHYMDDVRARNVMFGINTVDTRANLLKSEKLISGDKYIFIRNA
YLQNREFKVKDGEVEDDF*
AnnotationID:3358GeneID:3350
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 04:04:04
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:vacJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04333
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67776.1|AE016409_2 (AE016782) vacJ lipoprotein [Pseudomonas putida KT2440]
          Length = 235

 Score =  342 bits (876), Expect = 1e-93
 Identities = 165/235 (70%), Positives = 189/235 (80%), Gaps = 1/235 (0%)

>gb|AAO55632.1| (AE016863) vacJ lipoprotein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 233

 Score =  327 bits (837), Expect = 5e-89
 Identities = 154/234 (65%), Positives = 187/234 (79%), Gaps = 1/234 (0%)








 
Structural Features:
pfam04333, VacJ, VacJ like lipoprotein.
CD-Length = 200 residues,  99.5% aligned
Score =  273 bits (700), Expect = 1e-74
Identities = 107/199 (53%), Positives = 130/199 (65%), Gaps = 2/199 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6703




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23845




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36252




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3350_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3350
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5369
                           PA2800_tr
                           translation of PA2800
                           234
                           99.57
                           99.57
                           0
                           1223.0
     

     
     
150274
                           gb|AAG06188.1|AE004707_7
                           (AE004707) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           234
                           99.57
                           99.57
                           0
                           1223.0
     

     
     
150275
                           gb|AAN67776.1|AE016409_2
                           (AE016782) vacJ lipoprotein [Pseudomonas putida KT2440]
                           235
                           70.21
                           80.42
                           1
                           878.0
     

     
     
150276
                           gb|AAO55632.1|
                           (AE016863) vacJ lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           234
                           65.81
                           79.91
                           1
                           839.0
     

     
     
150280
                           gb|AAN67357.1|AE016362_1
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           263
                           38.40
                           50.95
                           44
                           422.0
     

     






      

          
GC ORFID: 46352How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2800Glimmer Score: 

          
Start: 2537232Stop: 2536528

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2800 translation of PA2800Homolog Bit Score 475.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene903 (ORF: BLASTX 326.0), t_PA2800 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCCCGCGGCGTGAACTGGATCGAACGTAGTGCCCGAATCCTGGCTTGCGCCAGCCTCGCATTGGCA 
CCCACGCTGTCCCTGGCGGCCAGTGAAGAAGACCCTTGGGAAAGCATCAACCGTCCCATCTTCACCTTCAAC 
GACACCCTGGACACCTATGCGCTGAAACCGCTGGCCCAGGGTTACCAGAAGGTCACCCCGAACTTCGTTCAG 
GACGGCGTGCACAACTTCTTCAACAACCTCGGCGACGTGAAGAACCTGGCCAACAACCTGTTGCAGGCCAAG 
TTCCACAATGCCGGCGTGGACACCAGCCGCCTGCTGTTCAACAGCACCTTCGGCCTGGCCGGCTTGATCGAC 
GTGGCGACCCCGATGGGCCTGCAGCGCAACGACGAGGACTTCGGCCAGACCCTGGGTTATTGGGGCGTCGGC 
AGCGGCCCGTACGTGATGCTGCCGTTCCTCGGCCCGAGCACGCTGCGCGATGCCCCGGCGAAGATCCCGGAC 
ATCTATGTCGGTCCCTACCACTACATGGACGATGTACGCGCGCGCAACGTGATGTTCGGCATCAACACCGTC 
GACACCCGTGCCAACCTGCTGAAGTCGGAAAAACTGATCAGCGGCGACAAGTACATCTTCATCCGCAACGCC 
TACCTGCAGAACCGCGAGTTCAAGGTCAAGGACGGCGAGGTGGAGGACGACTTCTAA