ViewGene

Locus Name:
GeneID:
Location:

GeneID: 334

TrivialName: PA14_24290

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24290

PAO1 Ortholog Locus: PA3082

Sequence Length: 1965

Protein Length: 654

Start: 2108357

Stop: 2110321

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06470.1|AE004732_4 (AE004732) glycine betaine transmethylase [Pseudomonas aeruginosa PAO1] Identities = 653/654 (99%), Positives = 654/654 (100%)

Sequence:

ATGTACATCCCCAACCGCCAGCCCCGGCTGCGCTCCGCGCCGGCCCGGGCCGGCTTCGCCTTCGCCGGGCTG
CTGCCGCTGCTGGGCGGCCAGGCCCAGGCCGTCGAATTCAGCTTCCTCGACAACGAGGTGTCCGGTTCGCTC
GATACCACCCTGTCCTACGGCACCCTGTGGCGGGTGCAGGGGCAGGACAAGAGCAACAACGACATCAACACC
AACGACGGCAACCGCAACTTCGATACCGGCCTGGTTTCCGAGGTCTACAAGATCACCTCGGACCTGGAGGCG
ACCTGGCGCAACTATGGCGTGTTCATCCGCGGCACGGCGTTCTATGACACCCAGATCATGGACAAGCGCAAC
GACTACTACAGCCACAACGATCCATCGCAGCCGAGCCAGAGCTATCCCCACGACGACCGTTTCACCAGCCAG
ACCCGCGACATCGCCGGGCACAAGGCGGAAATCCTCGACGCCTACGTCTACGGCAGCTGGGACATCGGCAAC
ATGCCGCTGAGCGCGCGCTTCGGCCGCCAGGTGTTCAACTGGGGCGAGGGCATCTTCTACCGTGGCGGGGTC
AACACCACCAACCCGGTGGATGCCGCCAAGTACCGCCTGCCCGGTTCCGAGCTCAAGGAAGTGCTGATGCCG
GTGGAGGCGCTGAGCTTCAACATCGGCCTGACCGACAACCTGTCGATGGAAACCTTCTACCAGTGGAACTGG
AAGGAAACCCGCCTCGACCCGGTCGGTACCTTCTTCTCCGAGACCGACCTGTTCGCCGACGGCGGCAACACC
GGCTACAGCGACTTCACCGGCACCGCGCTGGACACCCCGGTGCCCGGCTTCGGCAACGTCATCGGCCTGTAC
CAGGCGCTGGGCAACAATCCGCTGCTCAGCGGCGCGCTGAAGAACACCGGCCTCTATGCCAACGGCGTGACC
CCGGCCTACGGCAACGTAATGAAGGTGTCGTCCATCGGCAAGGACATCAACGCGCGCAACGACGGCCAGTTC
GGCGTGGCCTTCCGCTACATCGCCGAGGAACTGAACAGCACCGAGTTCGGCTTCTACTTCGTCAACTACCAC
TCCAAGGAGCCGACCCTGTACGCCGACATCGGCGACTATGCCGGGGCCGACCTGGCGGCGCTGGCCAACACC
CTGCGGCCGATCGCCGGCAACCTCGCCGAAGCCCTGGCCAACGGCCTGGTGACCGCCGACGTGATGGGCAAC
ATCAATGCCCGCCGCGAGTTCGCCGAAGACATCCGCATGTACGGCTTCAGCTTCAACACCACGGTGGGCGAC
GCCTCGGTGTTCGGCGAGCTGGCCTATCGGCCGAACCTGCCGATCGGCATCGCCGCCACCAACGACCTGATC
GGCGACCTCGCCCACGGTGCGGCGGAAGCCGCCAACGGCGGGCAGATCAACGTCGGCGGGCAGATGGTCGGC
CTCGGCGGGCAGATCCACAACTACGAGCGGGTCGAGGCGTTCAACACCTCCCTCGGGACCATCTACAACTTC
GGCCCGTCGCTGAGCTTCGACTCGTTGACCGGCGTCGCCGAGCTGGCCTCGGAACACCTGCGTGGCAGCAGC
CTGAAGTACACCGCCTACGACGGCAGCACCCGCTACTACGCCGGGCGCGGCAACAGCTCGTACGTTTCCGGC
GGCGACCGTGGCGACCAGGTGAACCGCAACGCCTACGGCTACACCCTGCTGCTCAGCGGCACCTGGAACGAC
GTGTTCGCCGGGGTCAACGTGTCGCCCTACGTGGTCTACAAGGACGACTTCGAAGGCAACTCCTACCAGACC
GGCAACTTCATCGAAGGTCGCAAGGCCTACACCCTGGGGGTCAAGGCCACCTACCTGAACAGCCTGGAAGGC
GAACTGCAGTACACCGAGTTCTACGGCGGCGGACAGAACAACAACATCCGCGACCGCGACAACATCGGCCTG
ACCGTCAAGTACTCCTTCTGA

Translation:

MYIPNRQPRLRSAPARAGFAFAGLLPLLGGQAQAVEFSFLDNEVSGSLDTTLSYGTLWRVQGQDKSNNDINT
NDGNRNFDTGLVSEVYKITSDLEATWRNYGVFIRGTAFYDTQIMDKRNDYYSHNDPSQPSQSYPHDDRFTSQ
TRDIAGHKAEILDAYVYGSWDIGNMPLSARFGRQVFNWGEGIFYRGGVNTTNPVDAAKYRLPGSELKEVLMP
VEALSFNIGLTDNLSMETFYQWNWKETRLDPVGTFFSETDLFADGGNTGYSDFTGTALDTPVPGFGNVIGLY
QALGNNPLLSGALKNTGLYANGVTPAYGNVMKVSSIGKDINARNDGQFGVAFRYIAEELNSTEFGFYFVNYH
SKEPTLYADIGDYAGADLAALANTLRPIAGNLAEALANGLVTADVMGNINARREFAEDIRMYGFSFNTTVGD
ASVFGELAYRPNLPIGIAATNDLIGDLAHGAAEAANGGQINVGGQMVGLGGQIHNYERVEAFNTSLGTIYNF
GPSLSFDSLTGVAELASEHLRGSSLKYTAYDGSTRYYAGRGNSSYVSGGDRGDQVNRNAYGYTLLLSGTWND
VFAGVNVSPYVVYKDDFEGNSYQTGNFIEGRKAYTLGVKATYLNSLEGELQYTEFYGGGQNNNIRDRDNIGL
TVKYSF*

AnnotationID:344 GeneID:334

AnnotatorUID: danlee

Modification Date/Time: 2004-02-05 17:05:09

Gene Name: gbt

Confidence Code: 1

GeneProduct: glycine betaine transmethylase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (2) Amino acid biosynthesis and metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam06980 (DUF1302)

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:671

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17025

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search (BLASTP).

Reference Type: Blast (text/plain)

Data: PA3082_CDS.cgi

URL:

ReferenceID:17813

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:334

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

553 PA3082_tr translation of PA3082 654 99.84 99.99 0 3449.0

27115 gb|AAG06470.1|AE004732_4 (AE004732) glycine betaine transmethylase [Pseudomonas aeruginosa PAO1] 654 99.84 99.99 0 3449.0

GC ORFID: `43336`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3082`	Glimmer Score:
Start: `2845573`	Stop: `2843609`
Length: `1965`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3082 translation of PA3082`	Homolog Bit Score `1333.0`
Other Homologs: `t_PA3082 (ORF: GLIMMER)`
GC ORF Sequence
ATGTACATCCCCAACCGCCAGCCCCGGCTGCGCTCCGCGCCGGCCCGGGCCGGCTTCGCCTTCGCCGGGCTG CTGCCGCTGCTGGGCGGCCAGGCCCAGGCCGTCGAATTCAGCTTCCTCGACAACGAGGTGTCCGGTTCGCTC GATACCACCCTGTCCTACGGCACCCTGTGGCGGGTGCAGGGGCAGGACAAGAGCAACAACGACATCAACACC AACGACGGCAACCGCAACTTCGATACCGGCCTGGTTTCCGAGGTCTACAAGATCACCTCGGACCTGGAGGCG ACCTGGCGCAACTATGGCGTGTTCATCCGCGGCACGGCGTTCTATGACACCCAGATCATGGACAAGCGCAAC GACTACTACAGCCACAACGATCCATCGCAGCCGAGCCAGAGCTATCCCCACGACGACCGTTTCACCAGCCAG ACCCGCGACATCGCCGGGCACAAGGCGGAAATCCTCGACGCCTACGTCTACGGCAGCTGGGACATCGGCAAC ATGCCGCTGAGCGCGCGCTTCGGCCGCCAGGTGTTCAACTGGGGCGAGGGCATCTTCTACCGTGGCGGGGTC AACACCACCAACCCGGTGGATGCCGCCAAGTACCGCCTGCCCGGTTCCGAGCTCAAGGAAGTGCTGATGCCG GTGGAGGCGCTGAGCTTCAACATCGGCCTGACCGACAACCTGTCGATGGAAACCTTCTACCAGTGGAACTGG AAGGAAACCCGCCTCGACCCGGTCGGTACCTTCTTCTCCGAGACCGACCTGTTCGCCGACGGCGGCAACACC GGCTACAGCGACTTCACCGGCACCGCGCTGGACACCCCGGTGCCCGGCTTCGGCAACGTCATCGGCCTGTAC CAGGCGCTGGGCAACAATCCGCTGCTCAGCGGCGCGCTGAAGAACACCGGCCTCTATGCCAACGGCGTGACC CCGGCCTACGGCAACGTAATGAAGGTGTCGTCCATCGGCAAGGACATCAACGCGCGCAACGACGGCCAGTTC GGCGTGGCCTTCCGCTACATCGCCGAGGAACTGAACAGCACCGAGTTCGGCTTCTACTTCGTCAACTACCAC TCCAAGGAGCCGACCCTGTACGCCGACATCGGCGACTATGCCGGGGCCGACCTGGCGGCGCTGGCCAACACC CTGCGGCCGATCGCCGGCAACCTCGCCGAAGCCCTGGCCAACGGCCTGGTGACCGCCGACGTGATGGGCAAC ATCAATGCCCGCCGCGAGTTCGCCGAAGACATCCGCATGTACGGCTTCAGCTTCAACACCACGGTGGGCGAC GCCTCGGTGTTCGGCGAGCTGGCCTATCGGCCGAACCTGCCGATCGGCATCGCCGCCACCAACGACCTGATC GGCGACCTCGCCCACGGTGCGGCGGAAGCCGCCAACGGCGGGCAGATCAACGTCGGCGGGCAGATGGTCGGC CTCGGCGGGCAGATCCACAACTACGAGCGGGTCGAGGCGTTCAACACCTCCCTCGGGACCATCTACAACTTC GGCCCGTCGCTGAGCTTCGACTCGTTGACCGGCGTCGCCGAGCTGGCCTCGGAACACCTGCGTGGCAGCAGC CTGAAGTACACCGCCTACGACGGCAGCACCCGCTACTACGCCGGGCGCGGCAACAGCTCGTACGTTTCCGGC GGCGACCGTGGCGACCAGGTGAACCGCAACGCCTACGGCTACACCCTGCTGCTCAGCGGCACCTGGAACGAC GTGTTCGCCGGGGTCAACGTGTCGCCCTACGTGGTCTACAAGGACGACTTCGAAGGCAACTCCTACCAGACC GGCAACTTCATCGAAGGTCGCAAGGCCTACACCCTGGGGGTCAAGGCCACCTACCTGAACAGCCTGGAAGGC GAACTGCAGTACACCGAGTTCTACGGCGGCGGACAGAACAACAACATCCGCGACCGCGACAACATCGGCCTG ACCGTCAAGTACTCCTTCTGA