ViewGene
Locus Name:
GeneID:
Location:

GeneID:3309
TrivialName: PA14_54290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54290
PAO1 Ortholog Locus:PA0773
Sequence Length:747
Protein Length:248
Start: 4816874
Stop: 4816128
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04162.1|AE004512_5 (AE004512) pyridoxal phosphate biosynthetic protein PdxJ [Pseudomonas aeruginosa PAO1]
Identities = 248/248 (100%), Positives = 248/248 (100%)
Sequence:
GTGACTGAAGCCACTCGAATTCTGCTCGGCGTGAACATCGATCACGTCGCCACCCTGCGCCAGGCCCGGGGC
ACCCGCTATCCGGACCCGGTGAAGGCCGCCCTGGACGCCGAGGAAGCCGGCGCCGACGGTATCACCGTGCAC
CTGCGCGAGGACCGCCGGCATATCCAGGAACGCGACGTGCGGGTGCTCAAGGAAGTGCTGCAGACGCGGATG
AACTTCGAGATGGGGGTCACCGAGGAAATGCTCGCCTTCGCCGAGGAGATCCGGCCGGCGCATAGCTGCCTG
GTCCCCGAGCGCCGCGAGGAACTGACCACCGAGGGCGGCCTCGACGTCGCCGGCCAGGAACAGCGCATCCGC
GACGCGGTGCGACGCCTGGCTGCGGTGGGCAGCGAAGTGTCGCTGTTCATCGATCCCGATCCGCGGCAGATC
GAGGCCTCCGCCCGGGTCGGCGCGCCGGCTATCGAACTGCATACCGGTCGCTACGCCGACGCCGAAGACCCC
GAGGAGCAGGCCCGTGAGCTGCAGCGGGTACGCGAGGGCGTGGCCCTTGGGCGTTCCCTCGGCCTGATCGTC
AACGCCGGGCATGGCCTGCACTACCACAATGTCGAGCCGGTCGCGGCCATCGACGGCATCAACGAGCTGAAC
ATCGGCCACGCCATCGTCGCCCACGCCCTGTTCGTCGGCTTCAGGCAGGCGGTGGCTGAGATGAAAGCGCTG
ATGCTGGCCGCGGCGACCAAGCGCTGA
Translation:
MTEATRILLGVNIDHVATLRQARGTRYPDPVKAALDAEEAGADGITVHLREDRRHIQERDVRVLKEVLQTRM
NFEMGVTEEMLAFAEEIRPAHSCLVPERREELTTEGGLDVAGQEQRIRDAVRRLAAVGSEVSLFIDPDPRQI
EASARVGAPAIELHTGRYADAEDPEEQARELQRVREGVALGRSLGLIVNAGHGLHYHNVEPVAAIDGINELN
IGHAIVAHALFVGFRQAVAEMKALMLAAATKR*
AnnotationID:3317GeneID:3309
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:46
Gene Name:pdxJ
Confidence Code:2
GeneProduct:pyridoxal phosphate biosynthetic protein PdxJ
Cell Localization:()
Synonyms:PA0773
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00003, COG0854, pfam03740
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd00003, PNPsynthase, Pyridoxine 5'-phosphate (PNP) synthase d...  Score:335, 8e-93
COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein.  Score: 331, 9e-92
pfam03740, PdxJ, Pyridoxal phosphate biosynthesis protein.  Score: 327, 1e-90






   
Genomic Context:
The gene sequence lepA-lep-rnc-era-recO-pdxJ is found in both E. coli and P. aeruginosa.






   
Comment:


















    ReferenceID:14793




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23763




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3309
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5307
                           PA0773_tr
                           translation of PA0773
                           248
                           99.99
                           99.99
                           0
                           1241.0
     

     
     
148476
                           gb|AAG04162.1|AE004512_5
                           (AE004512) pyridoxal phosphate biosynthetic protein PdxJ [Pseudomonas aeruginosa PAO1]
                           248
                           99.59
                           99.99
                           0
                           1238.0
     

     
     
148477
                           gb|AAO57670.1|
                           (AE016871) pyridoxal phosphate biosynthetic protein PdxJ [Pseudomonas syringae pv. tomato str. DC3000]
                           248
                           82.66
                           89.11
                           2
                           1032.0
     

     
     
148478
                           gb|AAN67058.1|AE016334_7
                           (AE016779) pyridoxal phosphate biosynthetic protein PdxJ [Pseudomonas putida KT2440]
                           248
                           81.85
                           88.70
                           2
                           1019.0
     

     
     
148479
                           gb|AAO68004.1|
                           (AE016835) putative pyridoxal phosphate biosynthetic protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           248
                           64.11
                           75.40
                           5
                           805.0
     

     






      

          
GC ORFID: 46311How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0773Glimmer Score: 

          
Start: 137033Stop: 137779

          
Length: 747


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0773 translation of PA0773Homolog Bit Score 482.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6222 (ORF: BLASTX 401.0), t_PA0773 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACTGAAGCCACTCGAATTCTGCTCGGCGTGAACATCGATCACGTCGCCACCCTGCGCCAGGCCCGGGGC 
ACCCGCTATCCGGACCCGGTGAAGGCCGCCCTGGACGCCGAGGAAGCCGGCGCCGACGGTATCACCGTGCAC 
CTGCGCGAGGACCGCCGGCATATCCAGGAACGCGACGTGCGGGTGCTCAAGGAAGTGCTGCAGACGCGGATG 
AACTTCGAGATGGGGGTCACCGAGGAAATGCTCGCCTTCGCCGAGGAGATCCGGCCGGCGCATAGCTGCCTG 
GTCCCCGAGCGCCGCGAGGAACTGACCACCGAGGGCGGCCTCGACGTCGCCGGCCAGGAACAGCGCATCCGC 
GACGCGGTGCGACGCCTGGCTGCGGTGGGCAGCGAAGTGTCGCTGTTCATCGATCCCGATCCGCGGCAGATC 
GAGGCCTCCGCCCGGGTCGGCGCGCCGGCTATCGAACTGCATACCGGTCGCTACGCCGACGCCGAAGACCCC 
GAGGAGCAGGCCCGTGAGCTGCAGCGGGTACGCGAGGGCGTGGCCCTTGGGCGTTCCCTCGGCCTGATCGTC 
AACGCCGGGCATGGCCTGCACTACCACAATGTCGAGCCGGTCGCGGCCATCGACGGCATCAACGAGCTGAAC 
ATCGGCCACGCCATCGTCGCCCACGCCCTGTTCGTCGGCTTCAGGCAGGCGGTGGCTGAGATGAAAGCGCTG 
ATGCTGGCCGCGGCGACCAAGCGCTGA