ViewGene
Locus Name:
GeneID:
Location:

GeneID:3260
TrivialName: PA14_50070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50070
PAO1 Ortholog Locus:PA1106
Sequence Length:714
Protein Length:237
Start: 4451380
Stop: 4452093
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04495.1|AE004540_15 (AE004540) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 237/237 (100%), Positives = 237/237 (100%)
Sequence:
ATGCTCAAGCACCTGCTCGTGCTCACCTGTGCCCTGCTCGCCAGCTCCTCGGCCCTGGCCCAGGTGATGGCC
CGCGACCTGGGCGATTTCGAACTCAAGCTGGCCACCAGTCCGACCCGCAGCATGGCCCAGGGCCTGGTCACC
CCGGGCAGCTCCGGCAGTTTCCACGGCGGCCTCGACCTAAGCCACGAAAGTGGCTGGTACATCGGCAACTGG
ACCTCCAACCTCGACCCCGGCAAGCCCACCGAGATCGACTCCTACGCCGGCTTCAAGCGCCCGCTGAACAAC
CGCCTGGGCTACGAAATGGGCCTGATCCGCTACAGCCGCCCGGAGCAGCCGGCCAACGACGCAGCCGAACTC
TACGGCGGCCTGTCGATCTTCGGCAGCCGGCTCGGCGCGGCCCTGAGCAGCGACCCGGGGCGCAACGACACC
ACCCTGTTCGCCGACCTCGGGGTCAACCCGCCGTTCGGTTTCGACGTCACCCTGAAGTACGGCAACCATCGC
CTGGACAACCCGGCGAGCCTCAGCGGCGGGGGCTACGTGAGCGTCTTCAACGACTGGTCGGTGAACCTCTCG
CGGCCCTGGCTGGGCATCGACCTGAACCTGTCCTACAGCGGCACCAGCCTGACCGGCAGCGATTGCAGCGCC
TACTCGGGACACAACAGCTACTGCGACACCACATTCATGCTGAAGGCGTCGCGTCCGTTCTTCTGA
Translation:
MLKHLLVLTCALLASSSALAQVMARDLGDFELKLATSPTRSMAQGLVTPGSSGSFHGGLDLSHESGWYIGNW
TSNLDPGKPTEIDSYAGFKRPLNNRLGYEMGLIRYSRPEQPANDAAELYGGLSIFGSRLGAALSSDPGRNDT
TLFADLGVNPPFGFDVTLKYGNHRLDNPASLSGGGYVSVFNDWSVNLSRPWLGIDLNLSYSGTSLTGSDCSA
YSGHNSYCDTTFMLKASRPFF*
AnnotationID:3268GeneID:3260
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 12:12:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1106
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23665




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3260
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5238
                           PA1106_tr
                           translation of PA1106
                           237
                           99.99
                           99.99
                           0
                           1256.0
     

     
     
146500
                           gb|AAG04495.1|AE004540_15
                           (AE004540) hypothetical protein PA1106 [Pseudomonas aeruginosa PAO1]
                           237
                           99.99
                           99.99
                           0
                           1256.0
     

     
     
146501
                           gb|AAO55110.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           57.43
                           70.66
                           5
                           717.0
     

     
     
146502
                           gb|AAN69121.1|AE016546_2
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           239
                           51.04
                           67.78
                           2
                           655.0
     

     






      

          
GC ORFID: 46262How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1106Glimmer Score: 

          
Start: 502528Stop: 501815

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1106 translation of PA1106Homolog Bit Score 488.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6014 (ORF: BLASTX 285.0), t_PA1106 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAAGCACCTGCTCGTGCTCACCTGTGCCCTGCTCGCCAGCTCCTCGGCCCTGGCCCAGGTGATGGCC 
CGCGACCTGGGCGATTTCGAACTCAAGCTGGCCACCAGTCCGACCCGCAGCATGGCCCAGGGCCTGGTCACC 
CCGGGCAGCTCCGGCAGTTTCCACGGCGGCCTCGACCTAAGCCACGAAAGTGGCTGGTACATCGGCAACTGG 
ACCTCCAACCTCGACCCCGGCAAGCCCACCGAGATCGACTCCTACGCCGGCTTCAAGCGCCCGCTGAACAAC 
CGCCTGGGCTACGAAATGGGCCTGATCCGCTACAGCCGCCCGGAGCAGCCGGCCAACGACGCAGCCGAACTC 
TACGGCGGCCTGTCGATCTTCGGCAGCCGGCTCGGCGCGGCCCTGAGCAGCGACCCGGGGCGCAACGACACC 
ACCCTGTTCGCCGACCTCGGGGTCAACCCGCCGTTCGGTTTCGACGTCACCCTGAAGTACGGCAACCATCGC 
CTGGACAACCCGGCGAGCCTCAGCGGCGGGGGCTACGTGAGCGTCTTCAACGACTGGTCGGTGAACCTCTCG 
CGGCCCTGGCTGGGCATCGACCTGAACCTGTCCTACAGCGGCACCAGCCTGACCGGCAGCGATTGCAGCGCC 
TACTCGGGACACAACAGCTACTGCGACACCACATTCATGCTGAAGGCGTCGCGTCCGTTCTTCTGA