ViewGene
Locus Name:
GeneID:
Location:

GeneID:3259
TrivialName: PA14_01430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01430
PAO1 Ortholog Locus:PA0117
Sequence Length:729
Protein Length:242
Start: 135162
Stop: 135890
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03507.1|AE004450_2 (AE004450) probable short chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 241/242 (99%), Positives = 241/242 (99%)
Sequence:
ATGACCCAGCGCAAAGCGGTTCTGGTAATGGGCGCCGGCGACGCCACCGGTGGCGCCATCGCCCGGCGGTTC
GCCCGCGAGGGCTACGTGGCGTGCGTCGCCCGGCGCAACGCGGAGAAGCTGGAGCCGCTGGTGCAGGCCATC
CGCGACCAAGGCGGCGAGGCCCTGGCCTGCGGCTGCGACGCACGCCAGGAGCAGCAGGTGATCGACCTCTTC
GCCCGCATCGAGGGTGAGGTCGGTGCGCTGGAGGCGGTGATCTTCAACGTCGGCGCCAACGTCTGGTTCCCG
ATCACCGAAACCACCGAACGGGTCTATCGCAAGGTCTGGGAGATGGCCGCCTTCGGCGGCTTCCTCACCGGC
CGCGAGGCGGCGCGGGTGATGCTGCCGCGGCAGCGCGGAACGATCATCTTCACTGGCGCCACCGCCTCGTTG
CGCGGCCGCGCGCATTTCGCCGCGTTCTCCGGCGCCAAGTTCGCCCTGCGTGCCCTGGCCCAGAGCATGGCG
CGCGAGCTGGGGCCGAAGGGCATCCACGTCGCCCACCCGATCATCGACGGCGCCATCGACACCGACTTCATC
CGCGAAACCCTGCCCGAGCTGTACAAGCGCAAGGAGCAGGACGGCATCCTCGATCCCGAGCACATCGCCGAG
ACCTACTGGCAGATCCACTGCCAGCCGCGCGACTGCTGGGTACACGAACTGGACCTGCGCCCCTGGATGGAA
ACCTTCTGA
Translation:
MTQRKAVLVMGAGDATGGAIARRFAREGYVACVARRNAEKLEPLVQAIRDQGGEALACGCDARQEQQVIDLF
ARIEGEVGALEAVIFNVGANVWFPITETTERVYRKVWEMAAFGGFLTGREAARVMLPRQRGTIIFTGATASL
RGRAHFAAFSGAKFALRALAQSMARELGPKGIHVAHPIIDGAIDTDFIRETLPELYKRKEQDGILDPEHIAE
TYWQIHCQPRDCWVHELDLRPWMETF*
AnnotationID:3267GeneID:3259
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:45
Gene Name:
Confidence Code:3
GeneProduct:putative short chain dehydrogenase
Cell Localization:()
Synonyms:PA0117
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028,COG4221
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68489.1|AE016481_5 (AE016784) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas putida KT2440]
          Length = 243

 Score =  317 bits (812), Expect = 4e-86
 Identities = 152/238 (63%), Positives = 185/238 (77%)

>gb|AAK22629.1| (AE005740) oxidoreductase, short-chain dehydrogenase/reductase
           family [Caulobacter crescentus CB15]
          Length = 245

 Score =  269 bits (687), Expect = 1e-71
 Identities = 140/239 (58%), Positives = 169/239 (70%), Gaps = 2/239 (0%)








 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. 
CD-Length = 247 residues,  89.5% aligned
Score =  129 bits (325), Expect = 3e-31
Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 2/223 (0%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  94.8% aligned
Score =  102 bits (256), Expect = 3e-23
Identities = 70/242 (28%), Positives = 105/242 (43%), Gaps = 16/242 (6%)

COG0300, DltE, Short-chain dehydrogenases of various substrate specificities
CD-Length = 265 residues,  81.5% aligned
Score =  100 bits (250), Expect = 2e-22







   
Genomic Context:






   
Comment:


















    ReferenceID:6521




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23663




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33491




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3259_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3259
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5237
                           PA0117_tr
                           translation of PA0117
                           242
                           99.58
                           99.58
                           0
                           1260.0
     

     
     
146493
                           gb|AAG03507.1|AE004450_2
                           (AE004450) probable short chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           242
                           99.58
                           99.58
                           0
                           1260.0
     

     
     
146494
                           gb|AAN68489.1|AE016481_5
                           (AE016784) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas putida KT2440]
                           243
                           62.55
                           76.54
                           1
                           810.0
     

     
     
146495
                           gb|AAK22629.1|
                           (AE005740) oxidoreductase, short-chain dehydrogenase/reductase family [Caulobacter crescentus CB15]
                           245
                           57.14
                           69.38
                           3
                           688.0
     

     
     
146496
                           dbj|BAC47870.1|
                           (AP005944) blr2605 [Bradyrhizobium japonicum USDA 110]
                           246
                           52.84
                           68.29
                           5
                           629.0
     

     






      

          
GC ORFID: 46261How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0117Glimmer Score: 

          
Start: 5936501Stop: 5937229

          
Length: 729


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0117 translation of PA0117Homolog Bit Score 489.0

          
Other Homologs:  t_PA0117 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGCGCAAAGCGGTTCTGGTAATGGGCGCCGGCGACGCCACCGGTGGCGCCATCGCCCGGCGGTTC 
GCCCGCGAGGGCTACGTGGCGTGCGTCGCCCGGCGCAACGCGGAGAAGCTGGAGCCGCTGGTGCAGGCCATC 
CGCGACCAAGGCGGCGAGGCCCTGGCCTGCGGCTGCGACGCACGCCAGGAGCAGCAGGTGATCGACCTCTTC 
GCCCGCATCGAGGGTGAGGTCGGTGCGCTGGAGGCGGTGATCTTCAACGTCGGCGCCAACGTCTGGTTCCCG 
ATCACCGAAACCACCGAACGGGTCTATCGCAAGGTCTGGGAGATGGCCGCCTTCGGCGGCTTCCTCACCGGC 
CGCGAGGCGGCGCGGGTGATGCTGCCGCGGCAGCGCGGAACGATCATCTTCACTGGCGCCACCGCCTCGTTG 
CGCGGCCGCGCGCATTTCGCCGCGTTCTCCGGCGCCAAGTTCGCCCTGCGTGCCCTGGCCCAGAGCATGGCG 
CGCGAGCTGGGGCCGAAGGGCATCCACGTCGCCCACCCGATCATCGACGGCGCCATCGACACCGACTTCATC 
CGCGAAACCCTGCCCGAGCTGTACAAGCGCAAGGAGCAGGACGGCATCCTCGATCCCGAGCACATCGCCGAG 
ACCTACTGGCAGATCCACTGCCAGCCGCGCGACTGCTGGGTACACGAACTGGACCTGCGCCCCTGGATGGAA 
ACCTTCTGA