ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3238

TrivialName: PA14_50330

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_50330

PAO1 Ortholog Locus: PA1088

Sequence Length: 762

Protein Length: 253

Start: 4474314

Stop: 4473553

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04477.1|AE004539_19 (AE004539) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 250/253 (98%), Positives = 250/253 (98%)

Sequence:

ATGACCGACAAACAACGGATAAAGGGCAGGCCTGTCGCTATCGACTACGAAAGCACGCTGGCTTTCTTCGAA
GGTCGGGCCGCCCGCGAATATCGCAATGCCCTGAGTTCGACGATGTATCAGGACCAGCAGCCGGAGCTGGTC
GAGGAGCGCGATCGGCGCGAGAAACTGCGCGTCGCTCCGGGACTCGCCCTCGGTATGGCCCGGCGGGTCCTC
GACATCGGCTGCGGTATCGGGCGCTGGGGCTGGCTGCTGGCCGAGGAAGCGCCGCAGGCCGATTACCTGGGC
ATCGACTTCTCCGCCGCGCTGGTGGAGAAAGCCCGCGACGAGGCACGGCAGCGCGGCTACGAGCGGCTGCTT
TTCCAGCGGATGTCGGCGACCGACATCCGTCCCGCCGAGCTGGCGCTCAGTCCTCCCTACGACCTGCTGCTG
GTCTCGGGACTACTCATCTATCTCAACGACAGCGACTGCCAGGAACTGTTGCGCCAGGCGCTGCAGCTGTGC
GCACCGGGCGGGCGGATCTACCTGCGCGAACCGGTAGCCGTGGAACAGCGCCTGACCCTGGATCGCTTCTTT
TCGAAGGAACTGGAACACGAGTATTCGGCGGTCTATCGCACGGTCGCCGAACTCAAGGACATGCTCGTACAG
GCCGGCGGAGGGGAAGGGCCTGCGATTCTCGAAGAGGACGGCCTGTTCGCCGAAGCGCTGGAAAAGCGTGCG
GAGACCCGCCAGTACTTCATGATCCTGCAGCGACGGGGATGA

Translation:

MTDKQRIKGRPVAIDYESTLAFFEGRAAREYRNALSSTMYQDQQPELVEERDRREKLRVAPGLALGMARRVL
DIGCGIGRWGWLLAEEAPQADYLGIDFSAALVEKARDEARQRGYERLLFQRMSATDIRPAELALSPPYDLLL
VSGLLIYLNDSDCQELLRQALQLCAPGGRIYLREPVAVEQRLTLDRFFSKELEHEYSAVYRTVAELKDMLVQ
AGGGEGPAILEEDGLFAEALEKRAETRQYFMILQRRG*

AnnotationID:3246 GeneID:3238

AnnotatorUID: danlee

Modification Date/Time: 2004-05-20 16:04:37

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA1088

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:6479

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23621

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3238

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5212 PA1088_tr translation of PA1088 253 98.81 98.81 0 1263.0

146107 gb|AAG04477.1|AE004539_19 (AE004539) hypothetical protein PA1088 [Pseudomonas aeruginosa PAO1] 253 98.81 98.81 0 1263.0

GC ORFID: `46240`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1088`	Glimmer Score:
Start: `479594`	Stop: `480355`
Length: `762`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1088 translation of PA1088`	Homolog Bit Score `491.0`
Other Homologs: `t_PA1088 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCGACAAACAACGGATAAAGGGCAGGCCTGTCGCTATCGACTACGAAAGCACGCTGGCTTTCTTCGAA GGTCGGGCCGCCCGCGAATATCGCAATGCCCTGAGTTCGACGATGTATCAGGACCAGCAGCCGGAGCTGGTC GAGGAGCGCGATCGGCGCGAGAAACTGCGCGTCGCTCCGGGACTCGCCCTCGGTATGGCCCGGCGGGTCCTC GACATCGGCTGCGGTATCGGGCGCTGGGGCTGGCTGCTGGCCGAGGAAGCGCCGCAGGCCGATTACCTGGGC ATCGACTTCTCCGCCGCGCTGGTGGAGAAAGCCCGCGACGAGGCACGGCAGCGCGGCTACGAGCGGCTGCTT TTCCAGCGGATGTCGGCGACCGACATCCGTCCCGCCGAGCTGGCGCTCAGTCCTCCCTACGACCTGCTGCTG GTCTCGGGACTACTCATCTATCTCAACGACAGCGACTGCCAGGAACTGTTGCGCCAGGCGCTGCAGCTGTGC GCACCGGGCGGGCGGATCTACCTGCGCGAACCGGTAGCCGTGGAACAGCGCCTGACCCTGGATCGCTTCTTT TCGAAGGAACTGGAACACGAGTATTCGGCGGTCTATCGCACGGTCGCCGAACTCAAGGACATGCTCGTACAG GCCGGCGGAGGGGAAGGGCCTGCGATTCTCGAAGAGGACGGCCTGTTCGCCGAAGCGCTGGAAAAGCGTGCG GAGACCCGCCAGTACTTCATGATCCTGCAGCGACGGGGATGA