ViewGene
Locus Name:
GeneID:
Location:

GeneID:3197
TrivialName: PA14_72160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72160
PAO1 Ortholog Locus:
Sequence Length:1305
Protein Length:434
Start: 6430982
Stop: 6429678
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC18002.1| (AP005218) putative ABC transporter ATP binding protein [Corynebacterium efficiens YS-314]
Identities = 107/454 (23%), Positives = 139/454 (30%), Gaps = 131/454 (28%)
Sequence:
GTGGTCGCCGAAGTCGATCTTGGCCAGCCCCACCAGCAGGTAGGTGGAGGGCACCAGCGGGCTGAGCAGGTG
CACCGGCTGGCCGACGATCGAGGCGCGGGCCATTTCCACCGGGGTGATGCCGTATTCGGCGGCGGCCTGGGT
GAGGATCGGCAGGACGCCGTAGTAGAAGGCGTCGTTGGACATGAAGAAGGTGAACGGCATGCTCACCAGCGC
GGTGATGGTCGCCAGGTATGGGCCCAGCGCCGGCGGGATCACCGCCAGCAGGCTCTTGGACATGGCGTCGAC
CATCCCGGTGCCGGAGAGGATGCCGGTGAACACCCCGGCGGCGAAGATCAGCGAGACCACCGCGAGAATGTT
CTCGGCGTGTGCGCCGATGCGCTTCTTCTGCTCCTGGATGCACGGGTAGTTGACGATCATGGCGATGCCGAA
GGCGATCATGAACAGCACCGGCATCGGCAGCAGGCCGGCGATCAGGGTCGCCATCAGGACCACGGTGAGAAT
GGCGTTGAACCACAGCAGCCTGGGCCGGCGCGCCTCCGGATACTGCGACACGCTGATCTCCGCCAGGTCCTC
GTGGTCGGTGGGCAGGTGCAGCTCGCCGAGGCGGGCGCGCTCGCGCTTGCCGTAGATCCAGGCGATGGCGAA
GATCGCCAGCAGCCCGGCGATCATCGCCGGGATCATCGGCACGAAGATATCCGCCGGGTCGACGTGCAGGGC
GCTCGCCGCGCGTGCGGTCGGGCCGCCCCAGGGGGTCATGTTGAGCACGCCGCTGGAGAGCATGATCAGGCA
GGCCATCACCAGCGGGCTCATGCCCAGGCGGCTGTACAACGGCAGCACGGCGGCCACGCAGATCATGTAGGT
GGTCGAGCCGTCGCCGTCGAGGGAGACGATCATCGCCAGCGCCGCGGTGCCCAGCGAGACCTTCAGCGGGTC
GCCCTTGACCAGCCGGAGGATCTTGCGCACCGCCGGGTCGAACAGCCCGGAGTCGATCATGATGGCGAAGTA
GAGGATCGCGAACATCAGCATCACCCCGGTCGGCGCCAGGGTGCGGATGCCGTCGAGCATCATCGGGCCGAG
GCCGGCGGCGAAACCGCCGATCAGGGCGAAGGCGATCGGGACCAGGATCAGCGCGATCAGCGCGGACAGGCG
CTTGGTCATGATCAGGAACATGAAGGTCGCCACCATGGCGAAGGCGAGCAGGGTCAGCATGGGTTCACTCCG
GGGAAGACGGCGGACGGGCGTGCGGCGTGCGGTCAGCAGGCGGCGTGCGGGAGGCGTCGCGCGGACGGAGTG
CGGCTGTAG
Translation:
MVAEVDLGQPHQQVGGGHQRAEQVHRLADDRGAGHFHRGDAVFGGGLGEDRQDAVVEGVVGHEEGERHAHQR
GDGRQVWAQRRRDHRQQALGHGVDHPGAGEDAGEHPGGEDQRDHRENVLGVCADALLLLLDARVVDDHGDAE
GDHEQHRHRQQAGDQGRHQDHGENGVEPQQPGPARLRILRHADLRQVLVVGGQVQLAEAGALALAVDPGDGE
DRQQPGDHRRDHRHEDIRRVDVQGARRACGRAAPGGHVEHAAGEHDQAGHHQRAHAQAAVQRQHGGHADHVG
GRAVAVEGDDHRQRRGAQRDLQRVALDQPEDLAHRRVEQPGVDHDGEVEDREHQHHPGRRQGADAVEHHRAE
AGGETADQGEGDRDQDQRDQRGQALGHDQEHEGRHHGEGEQGQHGFTPGKTADGRAACGQQAACGRRRADGV
RL*
AnnotationID:3205GeneID:3197
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14763




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23539




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 46199How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene3130Glimmer Score: 

          
Start: 5694671Stop: 5693367

          
Length: 1305


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3130 related to: gi|134874|sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein precursor pir||A34373 histidine-rich calcium-binding protein precursor - rabbit gb|AAA31279.1| (J05080) histidHomolog Bit Score 498.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGTCGCCGAAGTCGATCTTGGCCAGCCCCACCAGCAGGTAGGTGGAGGGCACCAGCGGGCTGAGCAGGTG 
CACCGGCTGGCCGACGATCGAGGCGCGGGCCATTTCCACCGGGGTGATGCCGTATTCGGCGGCGGCCTGGGT 
GAGGATCGGCAGGACGCCGTAGTAGAAGGCGTCGTTGGACATGAAGAAGGTGAACGGCATGCTCACCAGCGC 
GGTGATGGTCGCCAGGTATGGGCCCAGCGCCGGCGGGATCACCGCCAGCAGGCTCTTGGACATGGCGTCGAC 
CATCCCGGTGCCGGAGAGGATGCCGGTGAACACCCCGGCGGCGAAGATCAGCGAGACCACCGCGAGAATGTT 
CTCGGCGTGTGCGCCGATGCGCTTCTTCTGCTCCTGGATGCACGGGTAGTTGACGATCATGGCGATGCCGAA 
GGCGATCATGAACAGCACCGGCATCGGCAGCAGGCCGGCGATCAGGGTCGCCATCAGGACCACGGTGAGAAT 
GGCGTTGAACCACAGCAGCCTGGGCCGGCGCGCCTCCGGATACTGCGACACGCTGATCTCCGCCAGGTCCTC 
GTGGTCGGTGGGCAGGTGCAGCTCGCCGAGGCGGGCGCGCTCGCGCTTGCCGTAGATCCAGGCGATGGCGAA 
GATCGCCAGCAGCCCGGCGATCATCGCCGGGATCATCGGCACGAAGATATCCGCCGGGTCGACGTGCAGGGC 
GCTCGCCGCGCGTGCGGTCGGGCCGCCCCAGGGGGTCATGTTGAGCACGCCGCTGGAGAGCATGATCAGGCA 
GGCCATCACCAGCGGGCTCATGCCCAGGCGGCTGTACAACGGCAGCACGGCGGCCACGCAGATCATGTAGGT 
GGTCGAGCCGTCGCCGTCGAGGGAGACGATCATCGCCAGCGCCGCGGTGCCCAGCGAGACCTTCAGCGGGTC 
GCCCTTGACCAGCCGGAGGATCTTGCGCACCGCCGGGTCGAACAGCCCGGAGTCGATCATGATGGCGAAGTA 
GAGGATCGCGAACATCAGCATCACCCCGGTCGGCGCCAGGGTGCGGATGCCGTCGAGCATCATCGGGCCGAG 
GCCGGCGGCGAAACCGCCGATCAGGGCGAAGGCGATCGGGACCAGGATCAGCGCGATCAGCGCGGACAGGCG 
CTTGGTCATGATCAGGAACATGAAGGTCGCCACCATGGCGAAGGCGAGCAGGGTCAGCATGGGTTCACTCCG 
GGGAAGACGGCGGACGGGCGTGCGGCGTGCGGTCAGCAGGCGGCGTGCGGGAGGCGTCGCGCGGACGGAGTG 
CGGCTGTAG