ViewGene
Locus Name:
GeneID:
Location:

GeneID:3190
TrivialName: PA14_52750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52750
PAO1 Ortholog Locus:PA0892
Sequence Length:765
Protein Length:254
Start: 4675978
Stop: 4675214
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04281.1|AE004523_9 (AE004523) arginine/ornithine transport protein AotP [Pseudomonas aeruginosa PAO1]
Identities = 254/254 (100%), Positives = 254/254 (100%)
Sequence:
ATGTACAAACTGGAAGTCCAAGACCTGCACAAGCGCTACGGTAGCCACGAGGTGCTCAAGGGCGTCTCGCTG
GCAGCGAAAGCGGGCGACGTGATCAGCATCATCGGCTCGAGCGGTTCCGGCAAGAGCACCTTCCTGCGCTGC
ATCAACCTGCTGGAACAGCCGCACGCCGGCAAGATCCTGCTCAACGGCGAGGAGCTGAAGCTGGTGCCCGGC
CGCGACGGCGCGCTGAAGGCCGCCGACTCCCGCCAGTTGCAGCGCATGCGCTCGCGCCTGTCGATGGTGTTC
CAGCATTTCAACCTGTGGTCGCACATGAGCGCCCTGGAGAACGTCATCGAGGCGCCCGTGCATGTGCTCGGC
GTGTCGAAGAAGGAAGCCATCGAGAAGGCCGAGCACTACCTGGCCAAGGTCGGCGTGGCGCACCGCAAGGAC
GCCTACCCGGCGCACATGAGCGGCGGCGAGCAGCAGCGCGTGGCGATCGCCCGGGCGCTGGCGGTGGAGCCG
GAAGTGATGCTGTTCGACGAGCCGACCTCGGCGCTCGACCCCGAACTGGTGGGCGAAGTGCTGAAGGTCATG
CAGGACCTGGCGCAGGAAGGCCGCACCATGGTGGTGGTGACCCACGAGATGGGTTTCGCCCGCGAGGTGTCG
AACCAGTTGGTGTTCCTGCACAAGGGCCTGGTCGAGGAACACGGCTGCCCGAAGGAAGTCCTCGCCAACCCG
CAGTCGGACCGCCTCAAGCAGTTCCTCTCCGGCAGCCTCAAGTAA
Translation:
MYKLEVQDLHKRYGSHEVLKGVSLAAKAGDVISIIGSSGSGKSTFLRCINLLEQPHAGKILLNGEELKLVPG
RDGALKAADSRQLQRMRSRLSMVFQHFNLWSHMSALENVIEAPVHVLGVSKKEAIEKAEHYLAKVGVAHRKD
AYPAHMSGGEQQRVAIARALAVEPEVMLFDEPTSALDPELVGEVLKVMQDLAQEGRTMVVVTHEMGFAREVS
NQLVFLHKGLVEEHGCPKEVLANPQSDRLKQFLSGSLK*
AnnotationID:3198GeneID:3190
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 17:05:21
Gene Name:aotP
Confidence Code:1
GeneProduct:arginine/ornithine transport protein AotP
Cell Localization:(5) Inner membrane-associated
Synonyms:PA0892
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4598, COG1126, COG1135
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4598, HisP, ABC-type histidine transport system, ATPase component. Score: 442, 6e-125
COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component. Score: 352, 4e-98
COG1135, AbcC, ABC-type metal ion transport system, ATPase component.






   
Genomic Context:
Arginine/ornithine transport locus, adjacent to arginine/ornithine catabolic locus 






   
Comment:


















    ReferenceID:6383




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23525




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32001




  
Author/Investigator(s):
        Nishijyo T, Park SM, Lu CD, Itoh Y, Abdelal AT.






  
Title:
        Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa.





  
PubMed:
        99008987


MedLine:
        




    
Source:
J Bacteriol. 1998 Nov;180(21):5559-66






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3190
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5143
                           PA0892_tr
                           translation of PA0892
                           254
                           99.99
                           99.99
                           0
                           1282.0
     

     
     
144489
                           gb|AAC71074.1|
                           (AF012537) ATPase [Pseudomonas aeruginosa]
                           254
                           99.99
                           99.99
                           0
                           1282.0
     

     
     
144488
                           gb|AAG04281.1|AE004523_9
                           (AE004523) arginine/ornithine transport protein AotP [Pseudomonas aeruginosa PAO1]
                           254
                           99.99
                           99.99
                           0
                           1282.0
     

     
     
144490
                           gb|AAN70058.1|AE016645_4
                           (AE016790) basic amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           254
                           93.70
                           98.03
                           0
                           1216.0
     

     
     
144491
                           gb|AAO55349.1|
                           (AE016862) histidine ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           254
                           89.37
                           96.06
                           0
                           1161.0
     

     






      

          
GC ORFID: 46192How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0892Glimmer Score: 

          
Start: 277929Stop: 278693

          
Length: 765


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0892 translation of PA0892Homolog Bit Score 498.0

          
Other Homologs:  t_PA2926 (ORF: BLASTX 358.0), t_PA5152 (ORF: BLASTX 337.0), psyr_15may02_Scaffold5_revised_gene6103 (ORF: BLASTX 336.0), psyr_15may02_Scaffold6_revised_gene6950 (ORF: BLASTX 328.0), psyr_15may02_Scaffold2_revised_gene3825 (ORF: BLASTX 248.0), psyr_15may02_Scaffold7_revised_gene7435 (ORF: BLASTX 244.0), psyr_15may02_Scaffold2_revised_gene3873 (ORF: BLASTX 230.0), t_PA1256 (ORF: BLASTX 225.0), psyr_15may02_Scaffold5_revised_gene6133 (ORF: BLASTX 220.0), t_PA4192 (ORF: BLASTX 216.0), t_PA1339 (ORF: BLASTX 212.0), t_PA5074 (ORF: BLASTX 211.0), psyr_15may02_Scaffold7_revised_gene7291 (ORF: BLASTX 211.0), psyr_15may02_Scaffold7_revised_gene7315 (ORF: BLASTX 146.0), t_PA4594 (ORF: BLASTX 140.0), t_PA0892 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACAAACTGGAAGTCCAAGACCTGCACAAGCGCTACGGTAGCCACGAGGTGCTCAAGGGCGTCTCGCTG 
GCAGCGAAAGCGGGCGACGTGATCAGCATCATCGGCTCGAGCGGTTCCGGCAAGAGCACCTTCCTGCGCTGC 
ATCAACCTGCTGGAACAGCCGCACGCCGGCAAGATCCTGCTCAACGGCGAGGAGCTGAAGCTGGTGCCCGGC 
CGCGACGGCGCGCTGAAGGCCGCCGACTCCCGCCAGTTGCAGCGCATGCGCTCGCGCCTGTCGATGGTGTTC 
CAGCATTTCAACCTGTGGTCGCACATGAGCGCCCTGGAGAACGTCATCGAGGCGCCCGTGCATGTGCTCGGC 
GTGTCGAAGAAGGAAGCCATCGAGAAGGCCGAGCACTACCTGGCCAAGGTCGGCGTGGCGCACCGCAAGGAC 
GCCTACCCGGCGCACATGAGCGGCGGCGAGCAGCAGCGCGTGGCGATCGCCCGGGCGCTGGCGGTGGAGCCG 
GAAGTGATGCTGTTCGACGAGCCGACCTCGGCGCTCGACCCCGAACTGGTGGGCGAAGTGCTGAAGGTCATG 
CAGGACCTGGCGCAGGAAGGCCGCACCATGGTGGTGGTGACCCACGAGATGGGTTTCGCCCGCGAGGTGTCG 
AACCAGTTGGTGTTCCTGCACAAGGGCCTGGTCGAGGAACACGGCTGCCCGAAGGAAGTCCTCGCCAACCCG 
CAGTCGGACCGCCTCAAGCAGTTCCTCTCCGGCAGCCTCAAGTAA