ViewGene
Locus Name:
GeneID:
Location:

GeneID:3187
TrivialName: PA14_72840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72840
PAO1 Ortholog Locus:PA5521
Sequence Length:759
Protein Length:252
Start: 6487573
Stop: 6486815
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08906.1|AE004964_9 (AE004964) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 252/252 (100%), Positives = 252/252 (100%)
Sequence:
ATGAGCACGCCCGTCGTTCTTATCACTGGTGCAGCCGGCGGCTTGGGCCGGGCAATCGCCAAGCGTTTCGCC
CAGAGTCATTGGCGCATCGCCGCCACGGATGTGGATAAGGAGGGCCTGCACGCGCTGAACGCGCAGGTGCCG
TTGGACGCCAGCGGGGTCGCCGACCTGCGCAGCGCGGATAACTGCCATACCCTGATGTCGAAGATTCTCGCC
CGTACCGGACGTCTCGACGCCCTGGTGAATGCCGCGGGCGTCTGGCGCGAGGGGCCTGTGGAAAACTTCACC
GAGGAGGATTTCGACCTGGTCCTGGGAGTCAACCTCAAGGCCTCCTTCTACATGTGTCAGGCCGCGATACCC
TACCTGAAGGAAAACCAGGGCAGCATCGTCAACATCTCCAGCGACTCCGGACGCCAGGCCTACCGGGGTTCG
GCGGCGTATTGCGCGAGCAAGGCGGCGCTGACCATGCTGAGCAAGACCCTCGCGCTGGAACTGGCCGAGCAG
GGCGTGCGGGTCAACGCCGTGTCGCCGGCGGATATCGCCACGCCGATGCTCGACTACCAGGCCGAACGCTAT
GGGATGGGCAATCCGGATGGCTACAAGCGCGCGCTGCTGAAGGATTATCCACAGGGCAAGGCGGCACGCTTC
ATCCGCCCGGAAGAAGTCGCCGAGCTGGTCTGGTATCTCTGCGGCCCTCAGGCCGAAGCGATCACGGGCGCC
GACTTGGCGGTGGACTTCGGCCTGTCCGCTGGCCGCTGA
Translation:
MSTPVVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEGLHALNAQVPLDASGVADLRSADNCHTLMSKILA
RTGRLDALVNAAGVWREGPVENFTEEDFDLVLGVNLKASFYMCQAAIPYLKENQGSIVNISSDSGRQAYRGS
AAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYGMGNPDGYKRALLKDYPQGKAARF
IRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR*
AnnotationID:3195GeneID:3187
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:18
Gene Name:
Confidence Code:3
GeneProduct:putative short chain dehydrogenase
Cell Localization:()
Synonyms:PA5521
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  180 bits (458), Expect = 2e-46
Identities = 89/250 (35%), Positives = 137/250 (54%), Gaps = 10/250 (4%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  99.2% aligned
Score =  158 bits (401), Expect = 4e-40
Identities = 104/259 (40%), Positives = 135/259 (52%), Gaps = 20/259 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6377




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23519




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33309




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3187_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3187
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5140
                           PA5521_tr
                           translation of PA5521
                           252
                           99.99
                           99.99
                           0
                           1285.0
     

     
     
144462
                           gb|AAG08906.1|AE004964_9
                           (AE004964) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           252
                           99.99
                           99.99
                           0
                           1285.0
     

     
     
144463
                           dbj|BAC69130.1|
                           (AP005026) putative oxidoreductase [Streptomyces avermitilis MA-4680]
                           278
                           38.48
                           50.35
                           38
                           375.0
     

     
     
144464
                           emb|CAE28992.1|
                           (BX572604) putative oxidoreductase, short-chain dehydrogenase/reductase family [Rhodopseudomonas palustris CGA009]
                           266
                           32.33
                           42.48
                           41
                           274.0
     

     






      

          
GC ORFID: 46189How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5521Glimmer Score: 

          
Start: 5751262Stop: 5750504

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5521 translation of PA5521Homolog Bit Score 499.0

          
Other Homologs:  t_PA5521 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACGCCCGTCGTTCTTATCACTGGTGCAGCCGGCGGCTTGGGCCGGGCAATCGCCAAGCGTTTCGCC 
CAGAGTCATTGGCGCATCGCCGCCACGGATGTGGATAAGGAGGGCCTGCACGCGCTGAACGCGCAGGTGCCG 
TTGGACGCCAGCGGGGTCGCCGACCTGCGCAGCGCGGATAACTGCCATACCCTGATGTCGAAGATTCTCGCC 
CGTACCGGACGTCTCGACGCCCTGGTGAATGCCGCGGGCGTCTGGCGCGAGGGGCCTGTGGAAAACTTCACC 
GAGGAGGATTTCGACCTGGTCCTGGGAGTCAACCTCAAGGCCTCCTTCTACATGTGTCAGGCCGCGATACCC 
TACCTGAAGGAAAACCAGGGCAGCATCGTCAACATCTCCAGCGACTCCGGACGCCAGGCCTACCGGGGTTCG 
GCGGCGTATTGCGCGAGCAAGGCGGCGCTGACCATGCTGAGCAAGACCCTCGCGCTGGAACTGGCCGAGCAG 
GGCGTGCGGGTCAACGCCGTGTCGCCGGCGGATATCGCCACGCCGATGCTCGACTACCAGGCCGAACGCTAT 
GGGATGGGCAATCCGGATGGCTACAAGCGCGCGCTGCTGAAGGATTATCCACAGGGCAAGGCGGCACGCTTC 
ATCCGCCCGGAAGAAGTCGCCGAGCTGGTCTGGTATCTCTGCGGCCCTCAGGCCGAAGCGATCACGGGCGCC 
GACTTGGCGGTGGACTTCGGCCTGTCCGCTGGCCGCTGA