ViewGene
Locus Name:
GeneID:
Location:

GeneID:316
TrivialName: PA14_00790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00790
PAO1 Ortholog Locus:PA0067
Sequence Length:2046
Protein Length:681
Start: 76354
Stop: 78399
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03457.1|AE004446_5 (AE004446) oligopeptidase A [Pseudomonas aeruginosa PAO1]
Identities = 679/681 (99%), Positives = 679/681 (99%)
Sequence:
GTGAGCGCGAATCCCCTTCTGCAGGCCTACGACCTGCCGCCTTTCTCCTCCATTCGCCCGGAACACGTGAAG
CCGGCCATCGAGCGGATCCTCGCCGATAACCGCGCCGCCATCGCCCGCCTGCTGGAAACCCAGCGCGAGCAG
CCGACCTGGAAGGGCCTGGTGCTGGCGATGGACGAACTCAACGACCGTCTGGGCGCCGCCTGGAGTCCGGTC
AGCCACCTCAACGCGGTGTGCAACAGCGCCGAGCTGCGCGAGGCCTACGAGGCCTGTCTGCCGGAGCTGTCG
GCCTACTCCACCGAGCTGGGGCAGAACCGCGCCCTGTTCGAGGCCTACGAGGCGCTGGCGAAGAGCCCCGAG
GCGGCCGGCTTCGACGTGGCCCAGAAAACCATCCTCGAACACGCCCTGCGCGACTTCCGCCTGTCCGGCATC
GACTTGCCGGCGGACAAGCAGAAGCGCTATGCCGAGGTGCAGTCGCGCCTGTCCGAGCTGGGTAGCCGTTTC
TCCAACCAGCTGCTCGACGCCACCCAGGCCTGGACCAAGCATGTCACCGACGAAGCCGCGCTGGCCGGCCTG
ACCGATTCGGCCAAGGCCCAGATGAAGCAGGCCGCCGAGGCCAAGGGCCTGGACGGCTGGCTGATCAGCCTG
GAGTTCCCCAGCTACTACGCGGTGATGACCTATGCCGATGACCGCGCCCTGCGCGAAGAGGTATACGCCGCC
TACTGCACCCGCGCCTCCGACCAGGGCCCGAACGCCGGGCAGAACGACAACGGTCCGGTGATGGAAGAGATC
CTCGACCTGCGCCAGGAGCTGGCCGGCCTGCTCGGCTTCGCCAACTACGCCGAGCTGTCGCTGGCGACCAAG
ATGGCCGAGTCCAGCGACCAGGTGCTCAGCTTCCTCCGCGACCTGGCGGTGCGCAGCAAGCCGTTCGCCGCC
CGCGACCTGGAGCAGCTGCGCGCCTACGCCGCCGAGCAGGGCTGCACCGAATTGCAGAGCTGGGACGCCGGC
TACTACGCCGAGAAACTCCGCGAGGCGCGCTACAGCGTGTCCCAGGAGGCGCTGCGTGCCTACTTCCCGGTG
GACAAGGTGCTTTCCGGCCTGTTCGCCATTGTCGAGCGCCTCTACGGCATCCAGATCCGCGAACTGCACGAT
TTCGAGCGCTGGCACGCCGACGTACGCCTGTTCGAGATCCTCGAGAACGGCGAGCACGTCGGCCGCTTCTAC
TTCGACCTCTATGCCCGCGCCAACAAGCGCGGCGGTGCCTGGATGGACGGCGCCCGCGACCGCCGGCGCGAC
GCCCAGGGCCGGCTGATCGACCCGGTGGCCTACCTGGTGTGCAACTTCACCCCGGCGGTGAACGGCAAGCCG
GCGCTGCTGACCCACGACGAGGTCACTACCCTGTTCCACGAGTTCGGCCATGGCCTGCACCACCTGCTGACC
CGCGTCGAGCATGCCGCCGCCTCGGGGATCAACGGGGTGGCCTGGGACGCCGTCGAGCTGCCCAGCCAGTTC
ATGGAGAACTGGTGCTGGGAACCGGAAGGCCTGGCGCTGATCTCCGCCCAATACGAGACCGGCGAGGCGCTG
CCGCAGGACCTGCTGGAGAAGATGCTGGCGGCGAAGAACTTCCAGTCCGGGATGATGATGGTCCGCCAGCTG
GAGTTCTCCCTCTTCGACTTCGAGCTGCACGCTACCCACGGCGACGGCCGCAGCGTGCTGCAGGTACTCGAG
GGCATCCGCGACGAAGTGGCGGTGATGCGTCCGCCGGCGTACAACCGCTTCGCCAACAGCTTCGCGCACATC
TTCGCCGGCGGCTACGCGGCCGGTTACTACAGCTACAAGTGGGCCGAGGTGCTGTCCGCCGATGCCTTCTCG
CGTTTCGAGGAAGAAGGCGTGTTCAACCCCGATACCGGGCGTGCCTTCCGCGAGGCGATCCTGGCCCGCGGC
GGCTCCCGCGAGCCGATGCTGTTGTTCGTCGACTTCCGCGGTCGCGAGCCGTCCATCGACGCCCTGCTGCGT
CACTCCGGGCTGGTCGGGGAGGCCGCATGA
Translation:
MSANPLLQAYDLPPFSSIRPEHVKPAIERILADNRAAIARLLETQREQPTWKGLVLAMDELNDRLGAAWSPV
SHLNAVCNSAELREAYEACLPELSAYSTELGQNRALFEAYEALAKSPEAAGFDVAQKTILEHALRDFRLSGI
DLPADKQKRYAEVQSRLSELGSRFSNQLLDATQAWTKHVTDEAALAGLTDSAKAQMKQAAEAKGLDGWLISL
EFPSYYAVMTYADDRALREEVYAAYCTRASDQGPNAGQNDNGPVMEEILDLRQELAGLLGFANYAELSLATK
MAESSDQVLSFLRDLAVRSKPFAARDLEQLRAYAAEQGCTELQSWDAGYYAEKLREARYSVSQEALRAYFPV
DKVLSGLFAIVERLYGIQIRELHDFERWHADVRLFEILENGEHVGRFYFDLYARANKRGGAWMDGARDRRRD
AQGRLIDPVAYLVCNFTPAVNGKPALLTHDEVTTLFHEFGHGLHHLLTRVEHAAASGINGVAWDAVELPSQF
MENWCWEPEGLALISAQYETGEALPQDLLEKMLAAKNFQSGMMMVRQLEFSLFDFELHATHGDGRSVLQVLE
GIRDEVAVMRPPAYNRFANSFAHIFAGGYAAGYYSYKWAEVLSADAFSRFEEEGVFNPDTGRAFREAILARG
GSREPMLLFVDFRGREPSIDALLRHSGLVGEAA*
AnnotationID:326GeneID:316
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:28
Gene Name:prlC
Confidence Code:2
GeneProduct:oligopeptidase A
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0339,pfam01432
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:3.4.24.70
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65730.1|AE016199_2 (AE016774) oligopeptidase A [Pseudomonas putida KT2440]
          Length = 683

 Score = 1198 bits (3100), Expect = 0.0
 Identities = 595/678 (87%), Positives = 627/678 (92%)

>gb|AAO53698.1| (AE016856) oligopeptidase A [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 683

 Score = 1169 bits (3025), Expect = 0.0
 Identities = 582/682 (85%), Positives = 624/682 (91%), Gaps = 1/682 (0%)

>gb|AAN57658.1|AE015901_9 (AE015901) oligopeptidase A [Shewanella oneidensis MR-1]
          Length = 679

 Score =  830 bits (2144), Expect = 0.0
 Identities = 419/678 (61%), Positives = 513/678 (75%), Gaps = 6/678 (0%)






 
Structural Features:
COG0339, Dcp, Zn-dependent oligopeptidases 
[Amino acid transport and metabolism]
CD-Length = 683 residues,  99.1% aligned
Score =  927 bits (2397), Expect = 0.0
Identities = 401/683 (58%), Positives = 493/683 (72%), Gaps = 11/683 (1%)

pfam01432, Peptidase_M3, Peptidase family M3. 
CD-Length = 453 residues, 100.0% aligned
Score =  433 bits (1114), Expect = 4e-122
Identities = 200/463 (43%), Positives = 274/463 (59%), Gaps = 20/463 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14111




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17777




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33423




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:316_cdd.html


    		




 
URL:

















    ReferenceID:35512




  
Author/Investigator(s):
        Jiang X, Zhang M, Ding Y, Yao J, Chen H, Zhu D, Muramatu M.





  
Title:
        Escherichia coli prlC gene encodes a trypsin-like proteinase regulating the cell cycle.




  
PubMed:
        9792922


MedLine:
        




    
Source:
J Biochem (Tokyo). 1998 Nov;124(5):980-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9792922









           
Homologs By Global Alignment 

           

       



     
Gene ID:316
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
515
                           PA0067_tr
                           translation of PA0067
                           681
                           99.70
                           99.70
                           0
                           3506.0
     

     
     
25938
                           gb|AAG03457.1|AE004446_5
                           (AE004446) oligopeptidase A [Pseudomonas aeruginosa PAO1]
                           681
                           99.55
                           99.70
                           0
                           3503.0
     

     
     
25939
                           gb|AAN65730.1|AE016199_2
                           (AE016774) oligopeptidase A [Pseudomonas putida KT2440]
                           683
                           87.11
                           91.94
                           2
                           3099.0
     

     
     
25940
                           gb|AAO53698.1|
                           (AE016856) oligopeptidase A [Pseudomonas syringae pv. tomato str. DC3000]
                           683
                           85.06
                           91.36
                           2
                           3023.0
     

     
     
25941
                           gb|AAN57658.1|AE015901_9
                           (AE015901) oligopeptidase A [Shewanella oneidensis MR-1]
                           686
                           61.37
                           74.92
                           12
                           2155.0
     

     






      

          
GC ORFID: 43318How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0067Glimmer Score: 

          
Start: 5877691Stop: 5879736

          
Length: 2046


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0067 translation of PA0067Homolog Bit Score 1355.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2996 (ORF: BLASTX 1169.0), t_PA0067 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGCGAATCCCCTTCTGCAGGCCTACGACCTGCCGCCTTTCTCCTCCATTCGCCCGGAACACGTGAAG 
CCGGCCATCGAGCGGATCCTCGCCGATAACCGCGCCGCCATCGCCCGCCTGCTGGAAACCCAGCGCGAGCAG 
CCGACCTGGAAGGGCCTGGTGCTGGCGATGGACGAACTCAACGACCGTCTGGGCGCCGCCTGGAGTCCGGTC 
AGCCACCTCAACGCGGTGTGCAACAGCGCCGAGCTGCGCGAGGCCTACGAGGCCTGTCTGCCGGAGCTGTCG 
GCCTACTCCACCGAGCTGGGGCAGAACCGCGCCCTGTTCGAGGCCTACGAGGCGCTGGCGAAGAGCCCCGAG 
GCGGCCGGCTTCGACGTGGCCCAGAAAACCATCCTCGAACACGCCCTGCGCGACTTCCGCCTGTCCGGCATC 
GACTTGCCGGCGGACAAGCAGAAGCGCTATGCCGAGGTGCAGTCGCGCCTGTCCGAGCTGGGTAGCCGTTTC 
TCCAACCAGCTGCTCGACGCCACCCAGGCCTGGACCAAGCATGTCACCGACGAAGCCGCGCTGGCCGGCCTG 
ACCGATTCGGCCAAGGCCCAGATGAAGCAGGCCGCCGAGGCCAAGGGCCTGGACGGCTGGCTGATCAGCCTG 
GAGTTCCCCAGCTACTACGCGGTGATGACCTATGCCGATGACCGCGCCCTGCGCGAAGAGGTATACGCCGCC 
TACTGCACCCGCGCCTCCGACCAGGGCCCGAACGCCGGGCAGAACGACAACGGTCCGGTGATGGAAGAGATC 
CTCGACCTGCGCCAGGAGCTGGCCGGCCTGCTCGGCTTCGCCAACTACGCCGAGCTGTCGCTGGCGACCAAG 
ATGGCCGAGTCCAGCGACCAGGTGCTCAGCTTCCTCCGCGACCTGGCGGTGCGCAGCAAGCCGTTCGCCGCC 
CGCGACCTGGAGCAGCTGCGCGCCTACGCCGCCGAGCAGGGCTGCACCGAATTGCAGAGCTGGGACGCCGGC 
TACTACGCCGAGAAACTCCGCGAGGCGCGCTACAGCGTGTCCCAGGAGGCGCTGCGTGCCTACTTCCCGGTG 
GACAAGGTGCTTTCCGGCCTGTTCGCCATTGTCGAGCGCCTCTACGGCATCCAGATCCGCGAACTGCACGAT 
TTCGAGCGCTGGCACGCCGACGTACGCCTGTTCGAGATCCTCGAGAACGGCGAGCACGTCGGCCGCTTCTAC 
TTCGACCTCTATGCCCGCGCCAACAAGCGCGGCGGTGCCTGGATGGACGGCGCCCGCGACCGCCGGCGCGAC 
GCCCAGGGCCGGCTGATCGACCCGGTGGCCTACCTGGTGTGCAACTTCACCCCGGCGGTGAACGGCAAGCCG 
GCGCTGCTGACCCACGACGAGGTCACTACCCTGTTCCACGAGTTCGGCCATGGCCTGCACCACCTGCTGACC 
CGCGTCGAGCATGCCGCCGCCTCGGGGATCAACGGGGTGGCCTGGGACGCCGTCGAGCTGCCCAGCCAGTTC 
ATGGAGAACTGGTGCTGGGAACCGGAAGGCCTGGCGCTGATCTCCGCCCAATACGAGACCGGCGAGGCGCTG 
CCGCAGGACCTGCTGGAGAAGATGCTGGCGGCGAAGAACTTCCAGTCCGGGATGATGATGGTCCGCCAGCTG 
GAGTTCTCCCTCTTCGACTTCGAGCTGCACGCTACCCACGGCGACGGCCGCAGCGTGCTGCAGGTACTCGAG 
GGCATCCGCGACGAAGTGGCGGTGATGCGTCCGCCGGCGTACAACCGCTTCGCCAACAGCTTCGCGCACATC 
TTCGCCGGCGGCTACGCGGCCGGTTACTACAGCTACAAGTGGGCCGAGGTGCTGTCCGCCGATGCCTTCTCG 
CGTTTCGAGGAAGAAGGCGTGTTCAACCCCGATACCGGGCGTGCCTTCCGCGAGGCGATCCTGGCCCGCGGC 
GGCTCCCGCGAGCCGATGCTGTTGTTCGTCGACTTCCGCGGTCGCGAGCCGTCCATCGACGCCCTGCTGCGT 
CACTCCGGGCTGGTCGGGGAGGCCGCATGA