ViewGene
Locus Name:
GeneID:
Location:

GeneID:3151
TrivialName: PA14_61490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61490
PAO1 Ortholog Locus:
Sequence Length:1260
Protein Length:419
Start: 5486729
Stop: 5485470
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15]
Identities = 104/393 (26%), Positives = 130/393 (33%), Gaps = 62/393 (15%)
Sequence:
GTGTTCCGCCCGTTGGCTTCAGTGCGAATCCTTGTGCTGTTCGTCGAGCGCCTTGTTCTGCCAGCCGTCATT
GCCCGGCAGCAACAGGTTGAGGACGATGGCGACGATGGCGCACAGGGCGATGCCCTTCAGGCCGATGTCGTC
GGGACCGGTACCGCTGCCGATCAGCACGCCGCCGATGCCGAACACCAGCGTCACCGAGACGATCACCAGGTT
GCGCGCTTCCGAGAGATCGACCTTGTGCCGGATCAGGGTGTTCATGCCGACCGAGGCGATGGTGCCGAACAG
CAGGCAGAGGATGCCGCCCATCACCGGTACCGGGATGCTTTGCAGGATCGCGCCGAACTTGCCGACGAAGGC
CAGGGTGATGGCGATCACCGCCGCCCAGGTCATGATCTTCGGGTTGTAGTTCTTGGTCAGCATCACTGCGCC
GGTGACTTCCGCGTAGGTGGTGTTGGGCGGTCCGCCGAACAGGCCGGCGGCCGAGGTGGCCAGGCCGTCGCC
AAGGAGGGTGCGGTGCAGGCCGGGCTTCTTCAGGTAGTCCTGGCCGGTGACGCCGCCCACCGCGATGACCCC
GCCGATATGCTCGATGGCCGGGGCCAGGGCCACCGGGACGATGAACAGGATCGCCTGCCAGTTGAATTCCGG
CGCGGTGAATTTCGGCAGCTCCAGCCAGGGTGCGGCGACGATCGCGGCGGTGTCGACCACGCCGAAGACGAA
CGACAGGGCGAAGCCGACCAGCACGCCGGCGATGATCGGCACCAGGCGGAAGATACCCTTGCCGAATACCGC
CACCACCAGGGTGGTGAGCAGCGCCGGCATCGAGATCATCATCGCGGTGCGGTACGGCAGCAGCTCGCTGCC
GTCGCCGGCCTTGCCCATCGCCATGTTCGCCGCGATCGGCGCCATCGCCAGGCCGATCGAGATGATCACCGG
GCCGATCACCACCGGCGGCAGCAGTTTATCGATGAAGCCGGTGCCCTTGATCTTCACCGCCAGGCCCATGAA
GGTGTAGACGAAGCCGGCGGCGACCACCCCGCCCATGGTCGCGGCCAGGCCGAACTGGCCCTTGGCGAGGAT
GATCGGGGTGATGAAGGCGAAGCTGGAGGCGAGGAACACCGGTACCTGGCGCCCGGTCACCAATTGGAACAG
CAGGGTCCCGAGGCCGGCGGTGAACAGCGCGACGTTGGGATCCAGACCGGTGATCAGCGGCATCAGCACCAG
CGCGCCGAAGGCGACGAACAGCATCTGCGCGCCTGA
Translation:
MFRPLASVRILVLFVERLVLPAVIARQQQVEDDGDDGAQGDALQADVVGTGTAADQHAADAEHQRHRDDHQV
ARFREIDLVPDQGVHADRGDGAEQQAEDAAHHRYRDALQDRAELADEGQGDGDHRRPGHDLRVVVLGQHHCA
GDFRVGGVGRSAEQAGGRGGQAVAKEGAVQAGLLQVVLAGDAAHRDDPADMLDGRGQGHRDDEQDRLPVEFR
RGEFRQLQPGCGDDRGGVDHAEDERQGEADQHAGDDRHQAEDTLAEYRHHQGGEQRRHRDHHRGAVRQQLAA
VAGLAHRHVRRDRRHRQADRDDHRADHHRRQQFIDEAGALDLHRQAHEGVDEAGGDHPAHGRGQAELALGED
DRGDEGEAGGEEHRYLAPGHQLEQQGPEAGGEQRDVGIQTGDQRHQHQRAEGDEQHLRA*
AnnotationID:3159GeneID:3151
AnnotatorUID: danlee
Modification Date/Time: 2005-07-28 16:04:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14747




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 46153How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold3_revised_gene4307Glimmer Score: 

          
Start: 4750409Stop: 4749150

          
Length: 1260


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold3_revised_gene4307 related to: gi|18576147|ref|XP_100220.1| (XM_100220) similar to H2A histone family, member C (H. sapiens) [Homo sapiens]Homolog Bit Score 504.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4307 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTCCGCCCGTTGGCTTCAGTGCGAATCCTTGTGCTGTTCGTCGAGCGCCTTGTTCTGCCAGCCGTCATT 
GCCCGGCAGCAACAGGTTGAGGACGATGGCGACGATGGCGCACAGGGCGATGCCCTTCAGGCCGATGTCGTC 
GGGACCGGTACCGCTGCCGATCAGCACGCCGCCGATGCCGAACACCAGCGTCACCGAGACGATCACCAGGTT 
GCGCGCTTCCGAGAGATCGACCTTGTGCCGGATCAGGGTGTTCATGCCGACCGAGGCGATGGTGCCGAACAG 
CAGGCAGAGGATGCCGCCCATCACCGGTACCGGGATGCTTTGCAGGATCGCGCCGAACTTGCCGACGAAGGC 
CAGGGTGATGGCGATCACCGCCGCCCAGGTCATGATCTTCGGGTTGTAGTTCTTGGTCAGCATCACTGCGCC 
GGTGACTTCCGCGTAGGTGGTGTTGGGCGGTCCGCCGAACAGGCCGGCGGCCGAGGTGGCCAGGCCGTCGCC 
AAGGAGGGTGCGGTGCAGGCCGGGCTTCTTCAGGTAGTCCTGGCCGGTGACGCCGCCCACCGCGATGACCCC 
GCCGATATGCTCGATGGCCGGGGCCAGGGCCACCGGGACGATGAACAGGATCGCCTGCCAGTTGAATTCCGG 
CGCGGTGAATTTCGGCAGCTCCAGCCAGGGTGCGGCGACGATCGCGGCGGTGTCGACCACGCCGAAGACGAA 
CGACAGGGCGAAGCCGACCAGCACGCCGGCGATGATCGGCACCAGGCGGAAGATACCCTTGCCGAATACCGC 
CACCACCAGGGTGGTGAGCAGCGCCGGCATCGAGATCATCATCGCGGTGCGGTACGGCAGCAGCTCGCTGCC 
GTCGCCGGCCTTGCCCATCGCCATGTTCGCCGCGATCGGCGCCATCGCCAGGCCGATCGAGATGATCACCGG 
GCCGATCACCACCGGCGGCAGCAGTTTATCGATGAAGCCGGTGCCCTTGATCTTCACCGCCAGGCCCATGAA 
GGTGTAGACGAAGCCGGCGGCGACCACCCCGCCCATGGTCGCGGCCAGGCCGAACTGGCCCTTGGCGAGGAT 
GATCGGGGTGATGAAGGCGAAGCTGGAGGCGAGGAACACCGGTACCTGGCGCCCGGTCACCAATTGGAACAG 
CAGGGTCCCGAGGCCGGCGGTGAACAGCGCGACGTTGGGATCCAGACCGGTGATCAGCGGCATCAGCACCAG 
CGCGCCGAAGGCGACGAACAGCATCTGCGCGCCTGA