ViewGene
Locus Name:
GeneID:
Location:

GeneID:3150
TrivialName: PA14_57430
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57430
PAO1 Ortholog Locus:
Sequence Length:1677
Protein Length:558
Start: 5117901
Stop: 5116226
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/03/06. PA14_57430 (GeneID 3150) and PA14_57420 (GeneID 6660) replaced by PA14_57425 (GeneID 7387). Homology: gb|AAG07806.1|AE004856_17 (AE004856) penicillin-binding protein 3 [Pseudomonas aeruginosa PAO1]
Identities = 312/312 (100%), Positives = 312/312 (100%)
Sequence:
ATGAAACTGAATTATTTCCAGGGCGCCCTCTACCCATGGCGGTTCTGCGTGATCGTCGGCCTGCTGCTGGCG
ATGGTCGGCGCCATCGTCTGGCGAATCGTCGACCTGCACGTGATCGACCATGACTTCCTCAAGGGCCAGGGC
GACGCGCGTAGCGTGCGGCATATCGCTATCCCTGCGCACCGGGGCCTGATCACTGACCGCAACGGCGAACCG
CTGGCGGTGAGCACCCCGGTCACCACCCTGTGGGCCAACCCCAAGGAGCTGATGACCGCCAAGGAACGCTGG
CCGCAACTGGCGGCGGCGCTCGGGCAGGATACCAAGCTGTTCGCCGACCGCATCGAGCAGAACGCCGAGCGC
GAGTTCATCTATCTGGTCCGTGGGCTGACCCCGGAACAGGGCGAAGGCGTGATCGCCCTGAAGGTGCCGGGC
GTGTACTCCATCGAGGAGTTCCGGCGTTTCTACCCGGCTGGCGAAGTGGTGGCCCATGCGGTCGGCTTCACC
GATGTCGACGACCGCGGTCGCGAAGGTATCGAGCTGGCTTTCGACGAATGGCTGGCCGGCGTGCCGGGCAAG
CGCCAGGTGCTCAAGGATCGCCGTGGCCGCGTGATCAAGGACGTGCAGGTCACCAAGAATGCCAAGCCGGGC
AAGACCCTGGCGCTGTCCATCGACCTGCGCCTGCAGTACCTGGCTCATCGCGAACTGCGCAACGCTCTGCTG
GAGAACGGCGCCAAGGCCGGCAGCCTGGTGATCATGGACGTGAAGACCGGGGAGATCCTGGCCATGACCAAC
CAGCCGACCTACAACCCGAACAATCGTCGTAACCTGCAGCCGGCGGCCATGCGCAACCGGGCGATGATCGAC
GTGTTCGAGCCGGGCTCGACGGTCAAACCGTTCTCGATGAGCGCGGCGCTGGCCAGCGGGCGTTggaAACcc
atgCGaTATCGTCGACGTCTacccggGCACCCTGCAGAtcGgccgctACACCATTCGCGACGTATCGCGCAA
TTCGCGGCAACTCGATCTCACCGGCATCCTGATCAAGTCGAGCAACGTCGGCATCAGCAAGatcGCCTTCGA
CATCGGCGCCGAATCCATCTACTcggtCATGCAACAGGTCGGCctcggGCAGGACACGGGGTTGGGCTTCCC
CGGCGAGCGCGTCGGCAACCTGCCCAACCACCGCAAGTGGCCGAAGGCGGAAACCGCGACCCTGGCCTACGG
CTACGGTCTCTCGGTAACCGCGATCCAGTTGGCGCATGCCTATGCGGCCCTGGCCAACGACGGCAAGAGCGT
GCCGCTGAGCATGACCCGAGTCGACCGCGTGCCGGATGGCGTGCAGGTGATCTCGCCGGAAGTGGCTTCCAC
CGTGCAGGGCATGCTGCAACAAGTGGTCGAGGCCCAGGGcGGGGTGTTCCGCGCCCAGGTGCCGGGTTACCA
CGCCGCCGGCAAGAGCGGGACCGCGCGCAAGGTCTCGGTCGGCACCAAGGGCTACCGGGAAAACGCCTATCG
CTCGCTGTTCGCCGGTTTCGCCCCGGCCACCGATCCGCGCATCGCGATGGTCGTGGTGATCGACGAGCCGAG
CAAGGCGGGCTACTTCGGCGGCCTGGTGTCGGCGCCGGTGTTCAGCAAGGTCATGGCTGGCGCGCTGCGCCT
GATGAACGTGCCGCCGGATAA
Translation:
MKLNYFQGALYPWRFCVIVGLLLAMVGAIVWRIVDLHVIDHDFLKGQGDARSVRHIAIPAHRGLITDRNGEP
LAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPG
VYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPG
KTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMID
VFEPGSTVKPFSMSAALASGRWKPMRYRRRLPGHPADRPLHHSRRIAQFAATRSHRHPDQVEQRRHQQDRLR
HRRRIHLLGHATGRPRAGHGVGLPRRARRQPAQPPQVAEGGNRDPGLRLRSLGNRDPVGACLCGPGQRRQER
AAEHDPSRPRAGWRAGDLAGSGFHRAGHAATSGRGPGRGVPRPGAGLPRRRQERDRAQGLGRHQGLPGKRLS
LAVRRFRPGHRSAHRDGRGDRRAEQGGLLRRPGVGAGVQQGHGWRAAPDERAAG*
AnnotationID:3158GeneID:3150
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 15:03:28
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0768,pfam03717
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN66954.1|AE016324_4 (AE016779) penicillin-binding protein 3 [Pseudomonas putida KT2440]
          Length = 582

 Score =  512 bits (1318), Expect = e-144
 Identities = 248/315 (78%), Positives = 277/315 (87%)








 
Structural Features:






   
Genomic Context:






   
Comment:
Inactivated 2/03/06.  PA14_57430 (GeneID 3150) and PA14_57420 (GeneID 6660) 
replaced by PA14_57425 (GeneID 7387).



















    ReferenceID:6303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23445




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31460




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3150_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3150
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5071
                           PA4418_tr
                           translation of PA4418
                           647
                           56.56
                           61.36
                           157
                           1621.0
     

     
     
142415
                           gb|AAG07806.1|AE004856_17
                           (AE004856) penicillin-binding protein 3 [Pseudomonas aeruginosa PAO1]
                           647
                           56.56
                           61.36
                           157
                           1621.0
     

     
     
142416
                           emb|CAA58872.1|
                           (X84053) penicillin-binding protein 3 [Pseudomonas aeruginosa]
                           647
                           56.56
                           61.36
                           157
                           1621.0
     

     
     
142418
                           gb|AAO57863.1|
                           (AE016871) penicillin-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           648
                           45.21
                           54.16
                           163
                           1270.0
     

     
     
142417
                           gb|AAN66954.1|AE016324_4
                           (AE016779) penicillin-binding protein 3 [Pseudomonas putida KT2440]
                           717
                           40.16
                           46.58
                           294
                           1304.0
     

     






      

          
GC ORFID: 46152How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold12_revised_gene2040Glimmer Score: 

          
Start: 4381580Stop: 4379904

          
Length: 1677


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold12_revised_gene2040 related to: gi|15599614|ref|NP_253108.1| (NC_002516) penicillin-binding protein 3 [Pseudomonas aeruginosa] pir||S54872 penicillin-binding protein 3 - Pseudomonas aeruginosa pir||C83095 penicillin-binding protein 3Homolog Bit Score 504.0

          
Other Homologs:  t_PA2272 (ORF: BLASTX 296.0), t_PA4418 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTGAATTATTTCCAGGGCGCCCTCTACCCATGGCGGTTCTGCGTGATCGTCGGCCTGCTGCTGGCG 
ATGGTCGGCGCCATCGTCTGGCGAATCGTCGACCTGCACGTGATCGACCATGACTTCCTCAAGGGCCAGGGC 
GACGCGCGTAGCGTGCGGCATATCGCTATCCCTGCGCACCGGGGCCTGATCACTGACCGCAACGGCGAACCG 
CTGGCGGTGAGCACCCCGGTCACCACCCTGTGGGCCAACCCCAAGGAGCTGATGACCGCCAAGGAACGCTGG 
CCGCAACTGGCGGCGGCGCTCGGGCAGGATACCAAGCTGTTCGCCGACCGCATCGAGCAGAACGCCGAGCGC 
GAGTTCATCTATCTGGTCCGTGGGCTGACCCCGGAACAGGGCGAAGGCGTGATCGCCCTGAAGGTGCCGGGC 
GTGTACTCCATCGAGGAGTTCCGGCGTTTCTACCCGGCTGGCGAAGTGGTGGCCCATGCGGTCGGCTTCACC 
GATGTCGACGACCGCGGTCGCGAAGGTATCGAGCTGGCTTTCGACGAATGGCTGGCCGGCGTGCCGGGCAAG 
CGCCAGGTGCTCAAGGATCGCCGTGGCCGCGTGATCAAGGACGTGCAGGTCACCAAGAATGCCAAGCCGGGC 
AAGACCCTGGCGCTGTCCATCGACCTGCGCCTGCAGTACCTGGCTCATCGCGAACTGCGCAACGCTCTGCTG 
GAGAACGGCGCCAAGGCCGGCAGCCTGGTGATCATGGACGTGAAGACCGGGGAGATCCTGGCCATGACCAAC 
CAGCCGACCTACAACCCGAACAATCGTCGTAACCTGCAGCCGGCGGCCATGCGCAACCGGGCGATGATCGAC 
GTGTTCGAGCCGGGCTCGACGGTCAAACCGTTCTCGATGAGCGCGGCGCTGGCCAGCGGGCGTTggaAACcc 
atgCGaTATCGTCGACGTCTacccggGCACCCTGCAGAtcGgccgctACACCATTCGCGACGTATCGCGCAA 
TTCGCGGCAACTCGATCTCACCGGCATCCTGATCAAGTCGAGCAACGTCGGCATCAGCAAGatcGCCTTCGA 
CATCGGCGCCGAATCCATCTACTcggtCATGCAACAGGTCGGCctcggGCAGGACACGGGGTTGGGCTTCCC 
CGGCGAGCGCGTCGGCAACCTGCCCAACCACCGCAAGTGGCCGAAGGCGGAAACCGCGACCCTGGCCTACGG 
CTACGGTCTCTCGGTAACCGCGATCCAGTTGGCGCATGCCTATGCGGCCCTGGCCAACGACGGCAAGAGCGT 
GCCGCTGAGCATGACCCGAGTCGACCGCGTGCCGGATGGCGTGCAGGTGATCTCGCCGGAAGTGGCTTCCAC 
CGTGCAGGGCATGCTGCAACAAGTGGTCGAGGCCCAGGGcGGGGTGTTCCGCGCCCAGGTGCCGGGTTACCA 
CGCCGCCGGCAAGAGCGGGACCGCGCGCAAGGTCTCGGTCGGCACCAAGGGCTACCGGGAAAACGCCTATCG 
CTCGCTGTTCGCCGGTTTCGCCCCGGCCACCGATCCGCGCATCGCGATGGTCGTGGTGATCGACGAGCCGAG 
CAAGGCGGGCTACTTCGGCGGCCTGGTGTCGGCGCCGGTGTTCAGCAAGGTCATGGCTGGCGCGCTGCGCCT 
GATGAACGTGCCGCCGGATAA