ViewGene
Locus Name:
GeneID:
Location:

GeneID:3115
TrivialName: PA14_51210
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51210
PAO1 Ortholog Locus:
Sequence Length:822
Protein Length:273
Start: 4550803
Stop: 4551623
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Replaced by GID7404 (PA14_51205). Homology: gb|AAG04404.1|AE004534_2 (AE004534) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGACCAAGGACGCCACAACCAAAGGCACCAGCAGCAAAGATGTCGGCGCGGTAGTGAACGCCATTCAGATA
CTTCGCCACCTAGCCCACGCCGACGGACCGCAAGGCGTGGCCGCCATCGCTCGCGCCACCGGCATCAGCCCG
AGCAGCGCCTTCAATATCCTGCGCACCCTGAGCAACGAACGGCTGACCTCCTTCGACGATGCGGGCAAGACC
TACCAACTGGGCCTTGGCCTGTCGGAACTGGCCGTAGGATTCGTCGGACGCAGCTATGCCGACCTGATCCAG
CCAGAGCTGGAGCGACTGAGCCTTGCCCACCACATCCTCATCGCCCTGTGGCAAGTCACCGACGATGCGCAC
ATCCGCGTCATCGCCCTTGCCGCACCGCCCGTCGCCCACGTCAACGTCGCCGTCGGCACGCGCCTGCCGGAA
CTGGTCGGCGCCGCCGGGCGTTGCATTGCCGGCCTGCGCGAACTGCCGGAGGACGAACTGCGCCGCCGACTG
ACCCGCGTGCGCTGGGAAAATCCGCCGAGCTTCGAGCGCTACCAGGCCGAAGCGACCGAGGCCGTCGAGCGC
GGCTGGGCTATCGACCAGGAACACCTCTACCGCGGCGTGAGCATGGTCGCCAGCGCCATCACCGACCGcgAC
GGACAACCGCGCTTCGCCATCTCCGCGATCGGCATCAGCGCCCAGCACCAGCCCGACGACCTGGAACGGATC
GGCACCAGCCTGCGGGATACCGCGCGCTTCGTGAGCCGCGCGCTATTtCcccAGGggcGAGGCACTGAAGGA
GAAATCCTGAAATGGCATTCAACCCATTGA
Translation:
MTKDATTKGTSSKDVGAVVNAIQILRHLAHADGPQGVAAIARATGISPSSAFNILRTLSNERLTSFDDAGKT
YQLGLGLSELAVGFVGRSYADLIQPELERLSLAHHILIALWQVTDDAHIRVIALAAPPVAHVNVAVGTRLPE
LVGAAGRCIAGLRELPEDELRRRLTRVRWENPPSFERYQAEATEAVERGWAIDQEHLYRGVSMVASAITDRD
GQPRFAISAIGISAQHQPDDLERIGTSLRDTARFVSRALFPQGRGTEGEILKWHSTH*
AnnotationID:3123GeneID:3115
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 14:02:47
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1414
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1414, IclR, Transcriptional regulator [Transcription]
     CD-Length = 246 residues, 100.0% aligned
     Score =  146 bits (371), Expect = 2e-36






   
Genomic Context:






   
Comment:
Replaced by GID7404 (PA14_51205)



















    ReferenceID:6233




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23375




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3115
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5012
                           PA1015_tr
                           translation of PA1015
                           273
                           96.33
                           96.33
                           7
                           1308.0
     

     
     
141033
                           gb|AAG04404.1|AE004534_2
                           (AE004534) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           273
                           96.33
                           96.33
                           7
                           1308.0
     

     






      

          
GC ORFID: 46117How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1015Glimmer Score: 

          
Start: 403105Stop: 402284

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1015 translation of PA1015Homolog Bit Score 508.0

          
Other Homologs:  t_PA1015 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAAGGACGCCACAACCAAAGGCACCAGCAGCAAAGATGTCGGCGCGGTAGTGAACGCCATTCAGATA 
CTTCGCCACCTAGCCCACGCCGACGGACCGCAAGGCGTGGCCGCCATCGCTCGCGCCACCGGCATCAGCCCG 
AGCAGCGCCTTCAATATCCTGCGCACCCTGAGCAACGAACGGCTGACCTCCTTCGACGATGCGGGCAAGACC 
TACCAACTGGGCCTTGGCCTGTCGGAACTGGCCGTAGGATTCGTCGGACGCAGCTATGCCGACCTGATCCAG 
CCAGAGCTGGAGCGACTGAGCCTTGCCCACCACATCCTCATCGCCCTGTGGCAAGTCACCGACGATGCGCAC 
ATCCGCGTCATCGCCCTTGCCGCACCGCCCGTCGCCCACGTCAACGTCGCCGTCGGCACGCGCCTGCCGGAA 
CTGGTCGGCGCCGCCGGGCGTTGCATTGCCGGCCTGCGCGAACTGCCGGAGGACGAACTGCGCCGCCGACTG 
ACCCGCGTGCGCTGGGAAAATCCGCCGAGCTTCGAGCGCTACCAGGCCGAAGCGACCGAGGCCGTCGAGCGC 
GGCTGGGCTATCGACCAGGAACACCTCTACCGCGGCGTGAGCATGGTCGCCAGCGCCATCACCGACCGcgAC 
GGACAACCGCGCTTCGCCATCTCCGCGATCGGCATCAGCGCCCAGCACCAGCCCGACGACCTGGAACGGATC 
GGCACCAGCCTGCGGGATACCGCGCGCTTCGTGAGCCGCGCGCTATTtCcccAGGggcGAGGCACTGAAGGA 
GAAATCCTGAAATGGCATTCAACCCATTGA