ViewGene
Locus Name:
GeneID:
Location:

GeneID:3041
TrivialName: PA14_33620
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33620
PAO1 Ortholog Locus:
Sequence Length:2013
Protein Length:670
Start: 2970052
Stop: 2972064
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by GeneID 7196 (PA14_33610). Homology: gb|AAG05790.1|AE004667_1 (AE004667) probable non-ribosomal peptide synthetase [Pseudomonas aeruginosa PAO1]
Identities = 667/670 (99%), Positives = 669/670 (99%)
Sequence:
CTGTTCCCGGCCGCTACGATCGAGCGCCTGGGTCGCCACCTGACGACTCTGCTGGAGGCATTCGCCGAACAT
CCGCAGCGACGTCTGGTCGATCTGCAGATGCTCGAGAAGGCGGAGCTTAGCGCTATCGGCGCTATCTGGAAC
CGCAGCGACTCGGGCTATCCGGCAACGCCGCTGGTACACCAGCGAGTGGCCGAGCGGGCGCGTATGGCGCCG
GATGCGGTGGCGGTGATCTTCGACGAGGAAAAACTCACCTACGCCGAGCTGGATAGCCGGGCCAACCGCCTG
GCCCATGCGTTGATCGCCCGAGGCGTCGGCCCCGAGGTGCGGGTGGCGATCGCCATGCAGCGCAGCGCGGAG
ATCATGGTGGCGTTCCTGGCGGTACTGAAGGCCGGCGGCGCCTACGTGCCGCTGGACATCGAATACCCGCGC
GAGCGCCTGCTGTACATGATGCAGGACAGTCGCGCGCACCTGCTGCTGACCCATAGCCACCTGCTGGAGCGT
CTGCCGATCCCCGAGGGGTTGTCCTGCCTGTCCGTGGATCGCGAGGAGGAGTGGGCCGGCTTCCCCGCCCAT
GATCCAGAGGTGGCGCTGCACGGCGACAACCTGGCCTATGTGATCTACACCTCCGGCTCCACCGGCATGCCC
AAGGGCGTGGCGGTGTCCCACGGTCCGTTGATCGCCCATATCGTGGCCACCGGCGAGCGCTACGAGATGACC
CCGGAGGACTGCGAGCTGCACTTCATGTCGTTCGCCTTCGACGGTTCCCACGAAGGCTGGATGCACCCGTTG
ATCAACGGCGCGCGGGTGCTGATCCGCGACGACAGCCTGTGGCTGCCGGAACGGACCTACGCCGAGATGCAT
CGCCACGGGGTAACGGTGGGGGTGTTCCCGCCGGTGTACCTGCAGCAACTGGCCGAGCATGCCGAGCGCGAC
GGCAACCCGCCGCCGGTACGGGTCTACTGCTTCGGCGGCGACGCGGTGGCGCAGGCCAGCTATGACCTGGCG
TGGCGGGCGCTGAAGCCGAAGTACCTGTTCAACGGCTACGGCCCGACCGAGACGGTGGTGACGCCGCTGCTG
TGGAAAGCGCGAGCGGGCGATGCCTGTGGCGCGGCCTACATGCCGATCGGTACGCTGCTGGGCAACCGTAGC
GGCTACATCCTCGACGGGCAGTTGAACCTGCTGCCGGTAGGCGTGGCGGGCGAACTGTACCTGGGCGGGGAA
GGGGTGGCGCGCGGCTACCTGGAGCGTCCGGCGCTGACCGCCGAGCGTTTCGTGCCGGATCCCTTTGGTGCG
CCGGGCAGCCGGCTGTACCGCAGCGGCGACCTGACCCGTGGGCGTGCGGATGGGGTGGTGGATTACCTCGGA
CGGGTGGATCACCAGGTGAAGATCCGAGGCTTCCGCATCGAACTGGGAGAGATCGAGGCGCGCCTGCGCGAG
CATCCGGCGGTGCGCGAGGCGGTGGTGGTGGCCCAGCCGGGCGCGGTGGGCCAGCAGTTGGTGGGCTACGTG
GTGGCGCAGGAGCCGGCGGTCGCGGATTCGCCGGAAGCGCAGGCGGAGTGCCGGGCGCAGTTGAAGACGGCG
CTGCGCGAGCGCCTGCCGGAATACATGGTGCCATCGCACCTGTTGTTCCTGGCGCGGATGCCGCTGACGCCG
AACGGCAAGCTGGACCGCAAGGGCCTGCCACAGCCGGATGCGAGCCTGTTGCAGCAGGTCTACGTGGCGCCG
CGAAGCGATCTGGAGCAACAGGTCGCGGGGATCTGGGCGGAGGTCCTGCAATTGCAACAGGTCGGGCTCGAC
GACAACTTCTTCGAGCTTGGCGGCCACTCGTTGCTGGCGATCCAGGTGACTGCCCGGATGCAGAGCGAGGTC
GGCGTGGAGCTGCCGCTGGCGGCGCTGTTCCAGACCGAGTCGCTGCAAGCCTATGCCGAGCTTGCCGCGGCG
CAGACTTCCAGCAATGACACCGATTTCGATGACCTTCGTGAATTCATGAGCGAACTAGAGGCGATCTGA
Translation:
MFPAATIERLGRHLTTLLEAFAEHPQRRLVDLQMLEKAELSAIGAIWNRSDSGYPATPLVHQRVAERARMAP
DAVAVIFDEEKLTYAELDSRANRLAHALIARGVGPEVRVAIAMQRSAEIMVAFLAVLKAGGAYVPLDIEYPR
ERLLYMMQDSRAHLLLTHSHLLERLPIPEGLSCLSVDREEEWAGFPAHDPEVALHGDNLAYVIYTSGSTGMP
KGVAVSHGPLIAHIVATGERYEMTPEDCELHFMSFAFDGSHEGWMHPLINGARVLIRDDSLWLPERTYAEMH
RHGVTVGVFPPVYLQQLAEHAERDGNPPPVRVYCFGGDAVAQASYDLAWRALKPKYLFNGYGPTETVVTPLL
WKARAGDACGAAYMPIGTLLGNRSGYILDGQLNLLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGA
PGSRLYRSGDLTRGRADGVVDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVVAQPGAVGQQLVGYV
VAQEPAVADSPEAQAECRAQLKTALRERLPEYMVPSHLLFLARMPLTPNGKLDRKGLPQPDASLLQQVYVAP
RSDLEQQVAGIWAEVLQLQQVGLDDNFFELGGHSLLAIQVTARMQSEVGVELPLAALFQTESLQAYAELAAA
QTSSNDTDFDDLREFMSELEAI*
AnnotationID:3049GeneID:3041
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 17:05:14
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN69800.1|AE016617_3 (AE016789) non-ribosomal siderophore peptide synthetase [Pseudomonas
            putida KT2440]
          Length = 3470

 Score =  662 bits (1709), Expect = 0.0
 Identities = 355/648 (54%), Positives = 441/648 (68%), Gaps = 23/648 (3%)

>gb|AAO55652.1| (AE016863) pyoverdine chromophore precursor synthetase [Pseudomonas
            syringae pv. tomato str. DC3000]
          Length = 4336

 Score =  555 bits (1429), Expect = e-157
 Identities = 309/652 (47%), Positives = 412/652 (63%), Gaps = 7/652 (1%)

>emb|CAC48062.1| (AJ315451) putative non-ribosomal peptide synthase [Rhizobium
            leguminosarum bv. viciae]
          Length = 1333

 Score =  533 bits (1374), Expect = e-150
 Identities = 280/646 (43%), Positives = 402/646 (62%), Gaps = 16/646 (2%)









 
Structural Features:






   
Genomic Context:






   
Comment:
Replaced by GeneID 7196 (PA14_33610).


















    ReferenceID:14729




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32949




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3041_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3041
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
139004
                           gb|AAB60197.1|
                           (U07359) unknown [Pseudomonas aeruginosa]
                           685
                           47.15
                           49.34
                           321
                           1656.0
     

     
     
4909
                           PA2400_tr
                           translation of PA2400
                           1322
                           45.38
                           47.04
                           657
                           3102.0
     

     
     
138998
                           gb|AAG05788.1|AE004666_4
                           (AE004666) probable non-ribosomal peptide synthetase [Pseudomonas aeruginosa PAO1]
                           1322
                           45.38
                           47.04
                           657
                           3102.0
     

     
     
139064
                           dbj|BAB69352.1|
                           (AB070952) non-ribosomal peptide synthetase [Streptomyces avermitilis]
                           703
                           37.41
                           49.92
                           111
                           1048.0
     

     
     
139063
                           dbj|BAC70867.1|
                           (AP005034) putative non-ribosomal peptide synthetase [Streptomyces avermitilis MA-4680]
                           703
                           37.41
                           49.92
                           111
                           1048.0
     

     






      

          
GC ORFID: 46043How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold20_revised_gene4221Glimmer Score: 

          
Start: 1983864Stop: 1981852

          
Length: 2013


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold20_revised_gene4221 related to: gi|13094061|emb|CAC32046.1| (AJ310530) siderophore non-ribosomal peptide synthetase [Pseudomonas putida]Homolog Bit Score 520.0

          
Other Homologs:  t_PA2424 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGTTCCCGGCCGCTACGATCGAGCGCCTGGGTCGCCACCTGACGACTCTGCTGGAGGCATTCGCCGAACAT 
CCGCAGCGACGTCTGGTCGATCTGCAGATGCTCGAGAAGGCGGAGCTTAGCGCTATCGGCGCTATCTGGAAC 
CGCAGCGACTCGGGCTATCCGGCAACGCCGCTGGTACACCAGCGAGTGGCCGAGCGGGCGCGTATGGCGCCG 
GATGCGGTGGCGGTGATCTTCGACGAGGAAAAACTCACCTACGCCGAGCTGGATAGCCGGGCCAACCGCCTG 
GCCCATGCGTTGATCGCCCGAGGCGTCGGCCCCGAGGTGCGGGTGGCGATCGCCATGCAGCGCAGCGCGGAG 
ATCATGGTGGCGTTCCTGGCGGTACTGAAGGCCGGCGGCGCCTACGTGCCGCTGGACATCGAATACCCGCGC 
GAGCGCCTGCTGTACATGATGCAGGACAGTCGCGCGCACCTGCTGCTGACCCATAGCCACCTGCTGGAGCGT 
CTGCCGATCCCCGAGGGGTTGTCCTGCCTGTCCGTGGATCGCGAGGAGGAGTGGGCCGGCTTCCCCGCCCAT 
GATCCAGAGGTGGCGCTGCACGGCGACAACCTGGCCTATGTGATCTACACCTCCGGCTCCACCGGCATGCCC 
AAGGGCGTGGCGGTGTCCCACGGTCCGTTGATCGCCCATATCGTGGCCACCGGCGAGCGCTACGAGATGACC 
CCGGAGGACTGCGAGCTGCACTTCATGTCGTTCGCCTTCGACGGTTCCCACGAAGGCTGGATGCACCCGTTG 
ATCAACGGCGCGCGGGTGCTGATCCGCGACGACAGCCTGTGGCTGCCGGAACGGACCTACGCCGAGATGCAT 
CGCCACGGGGTAACGGTGGGGGTGTTCCCGCCGGTGTACCTGCAGCAACTGGCCGAGCATGCCGAGCGCGAC 
GGCAACCCGCCGCCGGTACGGGTCTACTGCTTCGGCGGCGACGCGGTGGCGCAGGCCAGCTATGACCTGGCG 
TGGCGGGCGCTGAAGCCGAAGTACCTGTTCAACGGCTACGGCCCGACCGAGACGGTGGTGACGCCGCTGCTG 
TGGAAAGCGCGAGCGGGCGATGCCTGTGGCGCGGCCTACATGCCGATCGGTACGCTGCTGGGCAACCGTAGC 
GGCTACATCCTCGACGGGCAGTTGAACCTGCTGCCGGTAGGCGTGGCGGGCGAACTGTACCTGGGCGGGGAA 
GGGGTGGCGCGCGGCTACCTGGAGCGTCCGGCGCTGACCGCCGAGCGTTTCGTGCCGGATCCCTTTGGTGCG 
CCGGGCAGCCGGCTGTACCGCAGCGGCGACCTGACCCGTGGGCGTGCGGATGGGGTGGTGGATTACCTCGGA 
CGGGTGGATCACCAGGTGAAGATCCGAGGCTTCCGCATCGAACTGGGAGAGATCGAGGCGCGCCTGCGCGAG 
CATCCGGCGGTGCGCGAGGCGGTGGTGGTGGCCCAGCCGGGCGCGGTGGGCCAGCAGTTGGTGGGCTACGTG 
GTGGCGCAGGAGCCGGCGGTCGCGGATTCGCCGGAAGCGCAGGCGGAGTGCCGGGCGCAGTTGAAGACGGCG 
CTGCGCGAGCGCCTGCCGGAATACATGGTGCCATCGCACCTGTTGTTCCTGGCGCGGATGCCGCTGACGCCG 
AACGGCAAGCTGGACCGCAAGGGCCTGCCACAGCCGGATGCGAGCCTGTTGCAGCAGGTCTACGTGGCGCCG 
CGAAGCGATCTGGAGCAACAGGTCGCGGGGATCTGGGCGGAGGTCCTGCAATTGCAACAGGTCGGGCTCGAC 
GACAACTTCTTCGAGCTTGGCGGCCACTCGTTGCTGGCGATCCAGGTGACTGCCCGGATGCAGAGCGAGGTC 
GGCGTGGAGCTGCCGCTGGCGGCGCTGTTCCAGACCGAGTCGCTGCAAGCCTATGCCGAGCTTGCCGCGGCG 
CAGACTTCCAGCAATGACACCGATTTCGATGACCTTCGTGAATTCATGAGCGAACTAGAGGCGATCTGA