ViewGene
Locus Name:
GeneID:
Location:

GeneID:3026
TrivialName: PA14_28590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28590
PAO1 Ortholog Locus:PA2748
Sequence Length:783
Protein Length:260
Start: 2463446
Stop: 2464228
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06136.1|AE004703_2 (AE004703) probable methionine aminopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 259/260 (99%), Positives = 260/260 (100%)
Sequence:
ATGATCAAGAGCGCGGAGGAAATCCAGCGCATGAGCGTGGCCGGCGCGCTCACCGCGAAAGTCCTCGAAGCC
CTCGACGAGGTGGTGCGGCCAGGCATCAGCACGGCAGAGATCGACCGCTTCTGCGAGCGCTACATCGTCGAC
ACCCTCGCGGCGATTCCCGGCAGCAAGGGGCAGTACGGCTATCCGTTCACGGTGAACACCTCGGTCAACGAG
GTGGTCTGTCATGGCTGGCCGTCGGCGCAGCAGATCCTCCGCGACGGCGATATCGTCAACGTCGACGTCACG
GTGATCAAGGACGGCTATTTCGGCGACAGCAGCAAGATGTACCGGGTCGGCGCCATCGACCGCCAGGCGCAG
AAGCTGCTCGACGTCACCCGCGAATGCCTGTACCGGGCGATCCGCGTGGTGCGCCCGGACGCCACCCTCGGC
GATATCGGGCATGCCATCCAGAGTCACGCCGAAGCCAACGGTTATTCGGTGGTCCGCGAATACTGCGGTCAT
GGCATCGGCCGCAAGATGCACGAGGCGCCGCAGGTCCTGCACTTCGGTCGCGCTGGCGCGGGTGCGCGGCTA
AAGGCCGGGATGACCTTCACCATCGAACCGATGATCAACCAGGGCGGCCACGCGGTGAAGCTGCACAAGGAC
GGCTGGACCGTGACCACCCGCGACCGCCGCCTGTCGGCCCAGTACGAGCACACCGTGCTGGTCACCGAGCGG
GGTTGCCGGGTCCTGACCCTGCGCGAAGAGGAGCGCGAGGCGCTGGCCGACCTGGCTGGCTGA
Translation:
MIKSAEEIQRMSVAGALTAKVLEALDEVVRPGISTAEIDRFCERYIVDTLAAIPGSKGQYGYPFTVNTSVNE
VVCHGWPSAQQILRDGDIVNVDVTVIKDGYFGDSSKMYRVGAIDRQAQKLLDVTRECLYRAIRVVRPDATLG
DIGHAIQSHAEANGYSVVREYCGHGIGRKMHEAPQVLHFGRAGAGARLKAGMTFTIEPMINQGGHAVKLHKD
GWTVTTRDRRLSAQYEHTVLVTERGCRVLTLREEEREALADLAG*
AnnotationID:3034GeneID:3026
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 08:08:12
Gene Name:
Confidence Code:3
GeneProduct:putative methionine aminopeptidase
Cell Localization:()
Synonyms:mapB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01086,COG0024
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67211.1|AE016348_3 (AE016779) methionine aminopeptidase, type I [Pseudomonas putida
           KT2440]
          Length = 260

 Score =  300 bits (768), Expect = 6e-81
 Identities = 141/250 (56%), Positives = 188/250 (75%), Gaps = 1/250 (0%)

>gb|AAO55053.1| (AE016861) methionine aminopeptidase, type I [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 260

 Score =  295 bits (755), Expect = 2e-79
 Identities = 140/250 (56%), Positives = 185/250 (74%), Gaps = 1/250 (0%)

>gb|AAM36299.1| (AE011774) methionine aminopeptidase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 258

 Score =  294 bits (753), Expect = 3e-79
 Identities = 142/246 (57%), Positives = 184/246 (74%)






 
Structural Features:
cd01086, MetAP1, Methionine Aminopeptidase 1.
CD-Length = 238 residues, 100.0% aligned
Score =  341 bits (877), Expect = 5e-95

COG0024, Map, Methionine aminopeptidase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 255 residues,  98.4% aligned
Score =  332 bits (852), Expect = 3e-92
Identities = 126/252 (50%), Positives = 170/252 (67%), Gaps = 3/252 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6055




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36286




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3026_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3026
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4890
                           PA2748_tr
                           translation of PA2748
                           260
                           99.61
                           99.99
                           0
                           1342.0
     

     
     
138639
                           gb|AAG06136.1|AE004703_2
                           (AE004703) probable methionine aminopeptidase [Pseudomonas aeruginosa PAO1]
                           260
                           99.61
                           99.99
                           0
                           1342.0
     

     
     
138645
                           gb|AAM38625.1|
                           (AE012027) methionine aminopeptidase [Xanthomonas axonopodis pv. citri str. 306]
                           260
                           55.76
                           69.23
                           4
                           742.0
     

     
     
4891
                           PA3657_tr
                           translation of PA3657
                           266
                           54.88
                           70.67
                           11
                           766.0
     

     
     
138640
                           gb|AAG07045.1|AE004785_9
                           (AE004785) methionine aminopeptidase [Pseudomonas aeruginosa PAO1]
                           266
                           54.88
                           70.67
                           11
                           766.0
     

     






      

          
GC ORFID: 46028How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2748Glimmer Score: 

          
Start: 2490480Stop: 2489698

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2748 translation of PA2748Homolog Bit Score 521.0

          
Other Homologs:  t_PA3657 (ORF: BLASTX 300.0), psyr_15may02_Scaffold3_revised_gene4797 (ORF: BLASTX 294.0), psyr_15may02_Scaffold1_revised_gene1116 (ORF: BLASTX 263.0), t_PA2748 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAAGAGCGCGGAGGAAATCCAGCGCATGAGCGTGGCCGGCGCGCTCACCGCGAAAGTCCTCGAAGCC 
CTCGACGAGGTGGTGCGGCCAGGCATCAGCACGGCAGAGATCGACCGCTTCTGCGAGCGCTACATCGTCGAC 
ACCCTCGCGGCGATTCCCGGCAGCAAGGGGCAGTACGGCTATCCGTTCACGGTGAACACCTCGGTCAACGAG 
GTGGTCTGTCATGGCTGGCCGTCGGCGCAGCAGATCCTCCGCGACGGCGATATCGTCAACGTCGACGTCACG 
GTGATCAAGGACGGCTATTTCGGCGACAGCAGCAAGATGTACCGGGTCGGCGCCATCGACCGCCAGGCGCAG 
AAGCTGCTCGACGTCACCCGCGAATGCCTGTACCGGGCGATCCGCGTGGTGCGCCCGGACGCCACCCTCGGC 
GATATCGGGCATGCCATCCAGAGTCACGCCGAAGCCAACGGTTATTCGGTGGTCCGCGAATACTGCGGTCAT 
GGCATCGGCCGCAAGATGCACGAGGCGCCGCAGGTCCTGCACTTCGGTCGCGCTGGCGCGGGTGCGCGGCTA 
AAGGCCGGGATGACCTTCACCATCGAACCGATGATCAACCAGGGCGGCCACGCGGTGAAGCTGCACAAGGAC 
GGCTGGACCGTGACCACCCGCGACCGCCGCCTGTCGGCCCAGTACGAGCACACCGTGCTGGTCACCGAGCGG 
GGTTGCCGGGTCCTGACCCTGCGCGAAGAGGAGCGCGAGGCGCTGGCCGACCTGGCTGGCTGA