ViewGene

Locus Name:
GeneID:
Location:

GeneID:3026
TrivialName: PA14_28590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28590
PAO1 Ortholog Locus:PA2748
Sequence Length:783
Protein Length:260
Start: 2463446
Stop: 2464228
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06136.1|AE004703_2 (AE004703) probable methionine aminopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 259/260 (99%), Positives = 260/260 (100%)
Sequence:
ATGATCAAGAGCGCGGAGGAAATCCAGCGCATGAGCGTGGCCGGCGCGCTCACCGCGAAAGTCCTCGAAGCC
CTCGACGAGGTGGTGCGGCCAGGCATCAGCACGGCAGAGATCGACCGCTTCTGCGAGCGCTACATCGTCGAC
ACCCTCGCGGCGATTCCCGGCAGCAAGGGGCAGTACGGCTATCCGTTCACGGTGAACACCTCGGTCAACGAG
GTGGTCTGTCATGGCTGGCCGTCGGCGCAGCAGATCCTCCGCGACGGCGATATCGTCAACGTCGACGTCACG
GTGATCAAGGACGGCTATTTCGGCGACAGCAGCAAGATGTACCGGGTCGGCGCCATCGACCGCCAGGCGCAG
AAGCTGCTCGACGTCACCCGCGAATGCCTGTACCGGGCGATCCGCGTGGTGCGCCCGGACGCCACCCTCGGC
GATATCGGGCATGCCATCCAGAGTCACGCCGAAGCCAACGGTTATTCGGTGGTCCGCGAATACTGCGGTCAT
GGCATCGGCCGCAAGATGCACGAGGCGCCGCAGGTCCTGCACTTCGGTCGCGCTGGCGCGGGTGCGCGGCTA
AAGGCCGGGATGACCTTCACCATCGAACCGATGATCAACCAGGGCGGCCACGCGGTGAAGCTGCACAAGGAC
GGCTGGACCGTGACCACCCGCGACCGCCGCCTGTCGGCCCAGTACGAGCACACCGTGCTGGTCACCGAGCGG
GGTTGCCGGGTCCTGACCCTGCGCGAAGAGGAGCGCGAGGCGCTGGCCGACCTGGCTGGCTGA
Translation:
MIKSAEEIQRMSVAGALTAKVLEALDEVVRPGISTAEIDRFCERYIVDTLAAIPGSKGQYGYPFTVNTSVNE
VVCHGWPSAQQILRDGDIVNVDVTVIKDGYFGDSSKMYRVGAIDRQAQKLLDVTRECLYRAIRVVRPDATLG
DIGHAIQSHAEANGYSVVREYCGHGIGRKMHEAPQVLHFGRAGAGARLKAGMTFTIEPMINQGGHAVKLHKD
GWTVTTRDRRLSAQYEHTVLVTERGCRVLTLREEEREALADLAG*
AnnotationID:3034GeneID:3026
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 08:08:12
Gene Name:
Confidence Code:3
GeneProduct:putative methionine aminopeptidase
Cell Localization:()
Synonyms:mapB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01086,COG0024
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67211.1|AE016348_3 (AE016779) methionine aminopeptidase, type I [Pseudomonas putida
           KT2440]
          Length = 260

 Score =  300 bits (768), Expect = 6e-81
 Identities = 141/250 (56%), Positives = 188/250 (75%), Gaps = 1/250 (0%)

>gb|AAO55053.1| (AE016861) methionine aminopeptidase, type I [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 260

 Score =  295 bits (755), Expect = 2e-79
 Identities = 140/250 (56%), Positives = 185/250 (74%), Gaps = 1/250 (0%)

>gb|AAM36299.1| (AE011774) methionine aminopeptidase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 258

 Score =  294 bits (753), Expect = 3e-79
 Identities = 142/246 (57%), Positives = 184/246 (74%)
Structural Features:
cd01086, MetAP1, Methionine Aminopeptidase 1.
CD-Length = 238 residues, 100.0% aligned
Score =  341 bits (877), Expect = 5e-95

COG0024, Map, Methionine aminopeptidase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 255 residues,  98.4% aligned
Score =  332 bits (852), Expect = 3e-92
Identities = 126/252 (50%), Positives = 170/252 (67%), Gaps = 3/252 (1%)
Genomic Context:
Comment:
ReferenceID:6055
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23197
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36286
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3026_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3026

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4890 PA2748_tr translation of PA2748 260 99.61 99.99 0 1342.0
138639 gb|AAG06136.1|AE004703_2 (AE004703) probable methionine aminopeptidase [Pseudomonas aeruginosa PAO1] 260 99.61 99.99 0 1342.0
138645 gb|AAM38625.1| (AE012027) methionine aminopeptidase [Xanthomonas axonopodis pv. citri str. 306] 260 55.76 69.23 4 742.0
4891 PA3657_tr translation of PA3657 266 54.88 70.67 11 766.0
138640 gb|AAG07045.1|AE004785_9 (AE004785) methionine aminopeptidase [Pseudomonas aeruginosa PAO1] 266 54.88 70.67 11 766.0
GC ORFID: 46028How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2748Glimmer Score:
Start: 2490480Stop: 2489698
Length: 783
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2748 translation of PA2748Homolog Bit Score 521.0
Other Homologs: t_PA3657 (ORF: BLASTX 300.0), psyr_15may02_Scaffold3_revised_gene4797 (ORF: BLASTX 294.0), psyr_15may02_Scaffold1_revised_gene1116 (ORF: BLASTX 263.0), t_PA2748 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAAGAGCGCGGAGGAAATCCAGCGCATGAGCGTGGCCGGCGCGCTCACCGCGAAAGTCCTCGAAGCC
CTCGACGAGGTGGTGCGGCCAGGCATCAGCACGGCAGAGATCGACCGCTTCTGCGAGCGCTACATCGTCGAC
ACCCTCGCGGCGATTCCCGGCAGCAAGGGGCAGTACGGCTATCCGTTCACGGTGAACACCTCGGTCAACGAG
GTGGTCTGTCATGGCTGGCCGTCGGCGCAGCAGATCCTCCGCGACGGCGATATCGTCAACGTCGACGTCACG
GTGATCAAGGACGGCTATTTCGGCGACAGCAGCAAGATGTACCGGGTCGGCGCCATCGACCGCCAGGCGCAG
AAGCTGCTCGACGTCACCCGCGAATGCCTGTACCGGGCGATCCGCGTGGTGCGCCCGGACGCCACCCTCGGC
GATATCGGGCATGCCATCCAGAGTCACGCCGAAGCCAACGGTTATTCGGTGGTCCGCGAATACTGCGGTCAT
GGCATCGGCCGCAAGATGCACGAGGCGCCGCAGGTCCTGCACTTCGGTCGCGCTGGCGCGGGTGCGCGGCTA
AAGGCCGGGATGACCTTCACCATCGAACCGATGATCAACCAGGGCGGCCACGCGGTGAAGCTGCACAAGGAC
GGCTGGACCGTGACCACCCGCGACCGCCGCCTGTCGGCCCAGTACGAGCACACCGTGCTGGTCACCGAGCGG
GGTTGCCGGGTCCTGACCCTGCGCGAAGAGGAGCGCGAGGCGCTGGCCGACCTGGCTGGCTGA