ViewGene
Locus Name:
GeneID:
Location:

GeneID:3005
TrivialName: PA14_38470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38470
PAO1 Ortholog Locus:PA2013
Sequence Length:798
Protein Length:265
Start: 3430753
Stop: 3431550
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05401.1|AE004627_9 (AE004627) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 265/265 (100%), Positives = 265/265 (100%)
Sequence:
ATGAGCGAATTCCAGACCATCCAGCTTGAGATCGACCCGCGCGGCGTAGCCACCCTGTGGCTGGACCGGGCG
GAAAAGAACAACGCCTTCAATGCCGTCGTGATCGACGAACTGTTGCAGGCCATCGATCGCGTCGGCAGCGAC
CCGCAGGTCCGCCTGCTGGTGCTGCGCGGCCGTGGCCGGCACTTCTGCGGCGGTGCCGACCTGGCCTGGATG
CAGCAGTCGGTGGACCTCGACTACCAGGGCAACCTGGCCGACGCCCAGCGCATCGCCGAACTCATGACCCAT
CTCTACAACCTGCCCAAGCCGACCCTGGCGGTGGTCCAGGGCGCGGTGTTCGGCGGCGGGGTCGGCCTGGTC
AGTTGCTGCGATATGGCCATCGGCAGCGACGACGCGACCTTCTGCCTGTCCGAGGTACGCATCGGCCTGATC
CCGGCGACCATCGCCCCGTTCGTGGTCAAGGCCATCGGCCAGCGCGCCGCGCGACGCTATTCGCTGACCGCC
GAGCGCTTCGACGGACGCCGCGCCAGCGAACTGGGCCTGCTCAGCGAAAGCTGTCCCGCCGCCGAACTGGAA
AGCCAGGCCGAGGCCTGGATCGCCAACCTGCTGCAAAACAGCCCGCGCGCCCTGGTCGCCTGCAAGGCGCTC
TACCATGAGGTCGAGGCCGCCGAGCTGAGCCCGGCGCTGCGCCGCTACACCGAGGCGGCCATCGCCCGCATC
CGCATCAGCCCGGAAGGCCAGGAAGGCCTGCGCGCCTTCCTGGAGAAACGCACGCCCGCCTGGAGAAACGAC
GCATGA
Translation:
MSEFQTIQLEIDPRGVATLWLDRAEKNNAFNAVVIDELLQAIDRVGSDPQVRLLVLRGRGRHFCGGADLAWM
QQSVDLDYQGNLADAQRIAELMTHLYNLPKPTLAVVQGAVFGGGVGLVSCCDMAIGSDDATFCLSEVRIGLI
PATIAPFVVKAIGQRAARRYSLTAERFDGRRASELGLLSESCPAAELESQAEAWIANLLQNSPRALVACKAL
YHEVEAAELSPALRRYTEAAIARIRISPEGQEGLRAFLEKRTPAWRNDA*
AnnotationID:3013GeneID:3005
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 12:12:58
Gene Name:gnyH
Confidence Code:1
GeneProduct:putative enoyl-CoA hydratase
Cell Localization:()
Synonyms:menB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1024
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Acyclic isoprenoid catabolism
Homology:
>gb|AAN69656.1|AE016600_6 (AE016789) enoyl-CoA hydratase, putative [Pseudomonas putida
           KT2440]
          Length = 271

 Score =  351 bits (901), Expect = 2e-96
 Identities = 176/262 (67%), Positives = 207/262 (79%)

>dbj|BAC61959.1| (AP005086) putative enoyl-CoA hydratase/isomerase [Vibrio
           parahaemolyticus]
          Length = 281

 Score =  239 bits (610), Expect = 1e-62
 Identities = 124/252 (49%), Positives = 167/252 (66%)
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
CD-Length = 257 residues, 100.0% aligned
Score =  173 bits (440), Expect = 1e-44
Identities = 100/263 (38%), Positives = 142/263 (53%), Gaps = 8/263 (3%)
Genomic Context:






   
Comment:


















    ReferenceID:6013




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23155




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38058




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3005_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3005
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4864
                           PA2013_tr
                           translation of PA2013
                           265
                           99.99
                           99.99
                           0
                           1349.0
     

     
     
138187
                           gb|AAG05401.1|AE004627_9
                           (AE004627) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           265
                           99.99
                           99.99
                           0
                           1349.0
     

     
     
138188
                           gb|AAN69656.1|AE016600_6
                           (AE016789) enoyl-CoA hydratase, putative [Pseudomonas putida KT2440]
                           271
                           65.31
                           76.75
                           6
                           896.0
     

     
     
138189
                           gb|AAO56238.1|
                           (AE016865) enoyl-CoA hydratase/isomerase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           282
                           60.99
                           73.75
                           17
                           870.0
     

     
     
138199
                           gb|AAM36715.1|
                           (AE011818) enoyl-CoA hydratase [Xanthomonas axonopodis pv. citri str. 306]
                           272
                           45.95
                           59.55
                           14
                           533.0
     

     






      

          
GC ORFID: 46007How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2013Glimmer Score: 

          
Start: 1523158Stop: 1522361

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2013 translation of PA2013Homolog Bit Score 524.0

          
Other Homologs:  t_PA2013 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAATTCCAGACCATCCAGCTTGAGATCGACCCGCGCGGCGTAGCCACCCTGTGGCTGGACCGGGCG 
GAAAAGAACAACGCCTTCAATGCCGTCGTGATCGACGAACTGTTGCAGGCCATCGATCGCGTCGGCAGCGAC 
CCGCAGGTCCGCCTGCTGGTGCTGCGCGGCCGTGGCCGGCACTTCTGCGGCGGTGCCGACCTGGCCTGGATG 
CAGCAGTCGGTGGACCTCGACTACCAGGGCAACCTGGCCGACGCCCAGCGCATCGCCGAACTCATGACCCAT 
CTCTACAACCTGCCCAAGCCGACCCTGGCGGTGGTCCAGGGCGCGGTGTTCGGCGGCGGGGTCGGCCTGGTC 
AGTTGCTGCGATATGGCCATCGGCAGCGACGACGCGACCTTCTGCCTGTCCGAGGTACGCATCGGCCTGATC 
CCGGCGACCATCGCCCCGTTCGTGGTCAAGGCCATCGGCCAGCGCGCCGCGCGACGCTATTCGCTGACCGCC 
GAGCGCTTCGACGGACGCCGCGCCAGCGAACTGGGCCTGCTCAGCGAAAGCTGTCCCGCCGCCGAACTGGAA 
AGCCAGGCCGAGGCCTGGATCGCCAACCTGCTGCAAAACAGCCCGCGCGCCCTGGTCGCCTGCAAGGCGCTC 
TACCATGAGGTCGAGGCCGCCGAGCTGAGCCCGGCGCTGCGCCGCTACACCGAGGCGGCCATCGCCCGCATC 
CGCATCAGCCCGGAAGGCCAGGAAGGCCTGCGCGCCTTCCTGGAGAAACGCACGCCCGCCTGGAGAAACGAC 
GCATGA