ViewGene
Locus Name:
GeneID:
Location:

GeneID:2986
TrivialName: PA14_25060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25060
PAO1 Ortholog Locus:PA3015
Sequence Length:819
Protein Length:272
Start: 2192322
Stop: 2191504
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06403.1|AE004726_9 (AE004726) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/272 (99%), Positives = 271/272 (99%)
Sequence:
ATGGAGATGGAACCCATGATCTGCCGTCCGTTCACTCTTTGTCTGGCCCTGCTCGGCCTGCTGAGCCTCCCC
GTCTTCGCGGCAGGGACCGCCGATGACCTGCTCGCCCTGCACCAGATGCGGCTCGCCACGCAGAAATCCCTG
AACGCCTTCTTCATGTACGTCGGCCAGGAAGGCGATCAACGCTACGCCAGCCTGATCGAAAGCTCGGCGCAG
ACGGCGGAAGCCCGCCTGCAGCGACTCGACGGCGTGAACGGCAGCGAATCCCGGCGCCTGCTGGGCCAGCTT
CGCGAGCAATGGCGGGACTATGCGCAAGACCTCGACAAGCTGACCGGCGCGGTGCGCGCCAAGGGCTACAGC
GACCTGCAACCGGTCGCCGACCTGGCACGGCGCAACCAGCAACTGATGGACCTCGGCGGCCAGTTGTATCGC
AGCCTGCAACGGGAAAACGCCGCCACGGTGCCGACGCTCACCGAGCAGAGCCGCGAACAGAGCCTGCTGATG
CAGGACATTGCCCTGGACTATGCCTCGCGCAACGCGTCGGTAGGCGCCAGCTTCTTCGGCGGCGGCGAGGAG
CGTCCACTGGACGACCTGGCCAGCCGCTTTTCGGTCAACCTGTTGAAGCTGCAGCAGGCGCCGCAGAACGAC
GAGGAGATCGCCAGGGCGCTGCGCAGCGTGGCGATCAAGTGGCACTACATCGAGAAGTCCCTGCGCAACTAC
AACCAGAACAGCGTGCCGTTCCTGGTCAACAAGAATGCAGACCGGATCATCGATGGCCTGGAGAAGGTCGCC
GCGCTGTATGCCGCGCGCAACCAATGA
Translation:
MEMEPMICRPFTLCLALLGLLSLPVFAAGTADDLLALHQMRLATQKSLNAFFMYVGQEGDQRYASLIESSAQ
TAEARLQRLDGVNGSESRRLLGQLREQWRDYAQDLDKLTGAVRAKGYSDLQPVADLARRNQQLMDLGGQLYR
SLQRENAATVPTLTEQSREQSLLMQDIALDYASRNASVGASFFGGGEERPLDDLASRFSVNLLKLQQAPQND
EEIARALRSVAIKWHYIEKSLRNYNQNSVPFLVNKNADRIIDGLEKVAALYAARNQ*
AnnotationID:2994GeneID:2986
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5975




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23117




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2986
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4838
                           PA3015_tr
                           translation of PA3015
                           272
                           99.63
                           99.63
                           0
                           1357.0
     

     
     
137884
                           gb|AAG06403.1|AE004726_9
                           (AE004726) hypothetical protein PA3015 [Pseudomonas aeruginosa PAO1]
                           272
                           99.63
                           99.63
                           0
                           1357.0
     

     






      

          
GC ORFID: 45988How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3015Glimmer Score: 

          
Start: 2761605Stop: 2762423

          
Length: 819


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3015 translation of PA3015Homolog Bit Score 527.0

          
Other Homologs:  t_PA3015 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGATGGAACCCATGATCTGCCGTCCGTTCACTCTTTGTCTGGCCCTGCTCGGCCTGCTGAGCCTCCCC 
GTCTTCGCGGCAGGGACCGCCGATGACCTGCTCGCCCTGCACCAGATGCGGCTCGCCACGCAGAAATCCCTG 
AACGCCTTCTTCATGTACGTCGGCCAGGAAGGCGATCAACGCTACGCCAGCCTGATCGAAAGCTCGGCGCAG 
ACGGCGGAAGCCCGCCTGCAGCGACTCGACGGCGTGAACGGCAGCGAATCCCGGCGCCTGCTGGGCCAGCTT 
CGCGAGCAATGGCGGGACTATGCGCAAGACCTCGACAAGCTGACCGGCGCGGTGCGCGCCAAGGGCTACAGC 
GACCTGCAACCGGTCGCCGACCTGGCACGGCGCAACCAGCAACTGATGGACCTCGGCGGCCAGTTGTATCGC 
AGCCTGCAACGGGAAAACGCCGCCACGGTGCCGACGCTCACCGAGCAGAGCCGCGAACAGAGCCTGCTGATG 
CAGGACATTGCCCTGGACTATGCCTCGCGCAACGCGTCGGTAGGCGCCAGCTTCTTCGGCGGCGGCGAGGAG 
CGTCCACTGGACGACCTGGCCAGCCGCTTTTCGGTCAACCTGTTGAAGCTGCAGCAGGCGCCGCAGAACGAC 
GAGGAGATCGCCAGGGCGCTGCGCAGCGTGGCGATCAAGTGGCACTACATCGAGAAGTCCCTGCGCAACTAC 
AACCAGAACAGCGTGCCGTTCCTGGTCAACAAGAATGCAGACCGGATCATCGATGGCCTGGAGAAGGTCGCC 
GCGCTGTATGCCGCGCGCAACCAATGA