ViewGene
Locus Name:
GeneID:
Location:

GeneID:297
TrivialName: PA14_36740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36740
PAO1 Ortholog Locus:PA2151
Sequence Length:1995
Protein Length:664
Start: 3277288
Stop: 3275294
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05539.1|AE004642_6 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 662/664 (99%), Positives = 663/664 (99%)
Sequence:
ATGAGTTCGATTGTCCGCAACAGCGACGATGATCCGCTGGTCATCGCCATCCAGCAGCCCCGTATCGCCATC
GAGTCGGTCAGCCCGGTGGTGGAAGAGGGCGCCTATCCCGCGAAGACCGAGAGCGACCGCGACCTGCGCCTG
GCCGCGCGAATCTTCACCGATGGCCATGAGGTACTCGGTGCCGAGGTGGTCTGGCGGCGTGTCGGGGAAACC
GCGGAGCGGCGCCTGCCGCTGCTGCCCGAAGGCAACGATTTCTGGAGCGCGCAGCTGCGCACGCCGCCCTGC
GGCCGCCTGTACTTCCGTATCGAAGCCTGGATCGACCGTTTTGCCGGCTACCGCCGCGAACTGCGCGCCAAG
CATGGCGCGCGCCTGCCGCTGGACCTGGAGCTGCGCGAGGGCGACGAACTGCTGCAGCGCTGCGCCGAGCGC
GGCGGTCCGGAGATCGCCGCCGCCTGTGCGCCGCTGGCCGAACGCCTGCAGGCCTGCCAGAGCGTCGAGGAG
CGGGTGGCGCTGTGGCTGGCGGCGCAGACCGGCGAACTGTTGCGTCTGGTCGGCCCGCGCGAGCACCTGGTG
CGCAGCCGCGAATACCCGCTGGAGGTGGAGCGACCGCTGGCGCGCTTCGCCAGTTGGTACGAGCTGTTCCCT
CGCTCGGAAAGCGGCGACCCGACACGCCACGGTACCTTCGACGACGTGATCCGGCGCCTGCCGCAGATCGCC
GCGATGGGCTTCGACGTTCTCTATTTCCCGCCGATCCACCCCATCGGCCGCACCCATCGCAAGGGCCGCAAC
AATTCCTTGCGTGCCGAGGCCGGCGACCCCGGCAGCCCGTATGCGATCGGCAGCGAGGAGGGCGGCCACGAG
GCGATCCATCCCGAACTGGGCGACCGCGAGGATTTCCGCCGGCTGCTCGTTGCGGTGCGCGAGCACGGCATG
GAACTGGCGCTGGACTTCGCCATCCAGTGCTCCCCCGACCACCCCTGGCTGCGCGAGCATCCCGGCTGGTTC
GCCTGGCGTCCGGACGGTAGCTTGCGCTACGCGGAGAACCCGCCGAAGAAGTACGAGGACATCGTCAACGTC
GACTTCTACGCCGAACAGGCCCTGCCGAGCCTGTGGGAAGCCTTGCGCGACGTGGTGCTGGGCTGGGTCGAG
CAGGGCGTGACGCTGTTTCGCGTCGACAACCCGCACACCAAGCCACTGCCGTTCTGGGAGTGGCTGATCGCC
GAGGTGCGCGGCCGCCATCCGCAGGTGATCTTCCTTTCCGAGGCGTTCACCCGCCCGGCGATGATGGCGCGC
CTGGGCAAGGTCGGCTTCAGCCAGAGCTACACCTATTTCACCTGGCGCAACGACAAGCAGGAACTGGCGGAG
TACTTCGCCGAACTCAACCagCCACCCTGGCGCGACTGCTACCGGCCGAACTTCTTCGTCAACACCCCGGAC
ATCAATCCCTGGTTCCTGCAACGCTCCGGCCGCCCCGGCTTCCTCATCCGTGCCGCCCTGGCGACCATGGGG
TCGGGGCTGTGGGGCATGTACTCCGGCTTCGAGCTGTGCGAGGCGGCGGCCTTGCCGGGCAAGGAGGAGTAC
CTCGACTCGGAGAAATACCAGTTGCGTCCGCGCGACTACCAGGCGCCGGGCAACATCGTCGCCGAGATCGCC
CGGCTCAACCGCATCCGCCGGGAAAACCCGGCATTGCAGACGCACCTCGGGTTCCAGGCCTACAACGCCTGG
AACGACCGCATCCTGTATTTCGGCAAGCGCACCGCGGACCTCGCCAACTTCGTCCTGGTGGCGGTCTGCCTG
GACCCGCACGAAGCCCAGGAGGCGCATTTCGAACTGCCGCTGTGGGAGTTCGGCCTGCCCGACGACGCCAGC
CTCCAGGGCGAGGACCTGATGAACGGGCATCGCTGGGTCTGGCACGGCAAGGTCCAGTGGATGCGCATCGAA
CCCTGGCACCTGCCGTTCGGCATCTGGCGCGTGCGGCGCGTCGACGCATAA
Translation:
MSSIVRNSDDDPLVIAIQQPRIAIESVSPVVEEGAYPAKTESDRDLRLAARIFTDGHEVLGAEVVWRRVGET
AERRLPLLPEGNDFWSAQLRTPPCGRLYFRIEAWIDRFAGYRRELRAKHGARLPLDLELREGDELLQRCAER
GGPEIAAACAPLAERLQACQSVEERVALWLAAQTGELLRLVGPREHLVRSREYPLEVERPLARFASWYELFP
RSESGDPTRHGTFDDVIRRLPQIAAMGFDVLYFPPIHPIGRTHRKGRNNSLRAEAGDPGSPYAIGSEEGGHE
AIHPELGDREDFRRLLVAVREHGMELALDFAIQCSPDHPWLREHPGWFAWRPDGSLRYAENPPKKYEDIVNV
DFYAEQALPSLWEALRDVVLGWVEQGVTLFRVDNPHTKPLPFWEWLIAEVRGRHPQVIFLSEAFTRPAMMAR
LGKVGFSQSYTYFTWRNDKQELAEYFAELNQPPWRDCYRPNFFVNTPDINPWFLQRSGRPGFLIRAALATMG
SGLWGMYSGFELCEAAALPGKEEYLDSEKYQLRPRDYQAPGNIVAEIARLNRIRRENPALQTHLGFQAYNAW
NDRILYFGKRTADLANFVLVAVCLDPHEAQEAHFELPLWEFGLPDDASLQGEDLMNGHRWVWHGKVQWMRIE
PWHLPFGIWRVRRVDA*
AnnotationID:307GeneID:297
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:58
Gene Name:
Confidence Code:3
GeneProduct:putative alpha-amylase family protein
Cell Localization:()
Synonyms:PA2151
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69650.1|AE016599_5 (AE016789) alpha-amylase family protein [Pseudomonas putida KT2440]
          Length = 661

 Score =  907 bits (2343), Expect = 0.0
 Identities = 424/649 (65%), Positives = 501/649 (77%), Gaps = 1/649 (0%)

>gb|AAM35046.1| (AE011639) alpha-amylase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 663

 Score =  726 bits (1875), Expect = 0.0
 Identities = 364/651 (55%), Positives = 440/651 (67%), Gaps = 14/651 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:597




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17739




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32577




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:297_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:297
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
487
                           PA2151_tr
                           translation of PA2151
                           664
                           99.69
                           99.84
                           0
                           3589.0
     

     
     
24843
                           gb|AAG05539.1|AE004642_6
                           (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           664
                           99.69
                           99.84
                           0
                           3589.0
     

     
     
24844
                           gb|AAN69650.1|AE016599_5
                           (AE016789) alpha-amylase family protein [Pseudomonas putida KT2440]
                           678
                           63.56
                           74.77
                           31
                           2348.0
     

     
     
24845
                           gb|AAO56260.1|
                           (AE016865) alpha-amylase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           675
                           62.22
                           74.22
                           14
                           2292.0
     

     
     
24848
                           gb|AAM39452.1|
                           (AE012109) alpha-amylase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           680
                           54.85
                           66.02
                           33
                           1880.0
     

     






      

          
GC ORFID: 43299How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2151Glimmer Score: 

          
Start: 1676626Stop: 1678620

          
Length: 1995


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2151 translation of PA2151Homolog Bit Score 1387.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1409 (ORF: BLASTX 901.0), t_PA2151 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTCGATTGTCCGCAACAGCGACGATGATCCGCTGGTCATCGCCATCCAGCAGCCCCGTATCGCCATC 
GAGTCGGTCAGCCCGGTGGTGGAAGAGGGCGCCTATCCCGCGAAGACCGAGAGCGACCGCGACCTGCGCCTG 
GCCGCGCGAATCTTCACCGATGGCCATGAGGTACTCGGTGCCGAGGTGGTCTGGCGGCGTGTCGGGGAAACC 
GCGGAGCGGCGCCTGCCGCTGCTGCCCGAAGGCAACGATTTCTGGAGCGCGCAGCTGCGCACGCCGCCCTGC 
GGCCGCCTGTACTTCCGTATCGAAGCCTGGATCGACCGTTTTGCCGGCTACCGCCGCGAACTGCGCGCCAAG 
CATGGCGCGCGCCTGCCGCTGGACCTGGAGCTGCGCGAGGGCGACGAACTGCTGCAGCGCTGCGCCGAGCGC 
GGCGGTCCGGAGATCGCCGCCGCCTGTGCGCCGCTGGCCGAACGCCTGCAGGCCTGCCAGAGCGTCGAGGAG 
CGGGTGGCGCTGTGGCTGGCGGCGCAGACCGGCGAACTGTTGCGTCTGGTCGGCCCGCGCGAGCACCTGGTG 
CGCAGCCGCGAATACCCGCTGGAGGTGGAGCGACCGCTGGCGCGCTTCGCCAGTTGGTACGAGCTGTTCCCT 
CGCTCGGAAAGCGGCGACCCGACACGCCACGGTACCTTCGACGACGTGATCCGGCGCCTGCCGCAGATCGCC 
GCGATGGGCTTCGACGTTCTCTATTTCCCGCCGATCCACCCCATCGGCCGCACCCATCGCAAGGGCCGCAAC 
AATTCCTTGCGTGCCGAGGCCGGCGACCCCGGCAGCCCGTATGCGATCGGCAGCGAGGAGGGCGGCCACGAG 
GCGATCCATCCCGAACTGGGCGACCGCGAGGATTTCCGCCGGCTGCTCGTTGCGGTGCGCGAGCACGGCATG 
GAACTGGCGCTGGACTTCGCCATCCAGTGCTCCCCCGACCACCCCTGGCTGCGCGAGCATCCCGGCTGGTTC 
GCCTGGCGTCCGGACGGTAGCTTGCGCTACGCGGAGAACCCGCCGAAGAAGTACGAGGACATCGTCAACGTC 
GACTTCTACGCCGAACAGGCCCTGCCGAGCCTGTGGGAAGCCTTGCGCGACGTGGTGCTGGGCTGGGTCGAG 
CAGGGCGTGACGCTGTTTCGCGTCGACAACCCGCACACCAAGCCACTGCCGTTCTGGGAGTGGCTGATCGCC 
GAGGTGCGCGGCCGCCATCCGCAGGTGATCTTCCTTTCCGAGGCGTTCACCCGCCCGGCGATGATGGCGCGC 
CTGGGCAAGGTCGGCTTCAGCCAGAGCTACACCTATTTCACCTGGCGCAACGACAAGCAGGAACTGGCGGAG 
TACTTCGCCGAACTCAACCagCCACCCTGGCGCGACTGCTACCGGCCGAACTTCTTCGTCAACACCCCGGAC 
ATCAATCCCTGGTTCCTGCAACGCTCCGGCCGCCCCGGCTTCCTCATCCGTGCCGCCCTGGCGACCATGGGG 
TCGGGGCTGTGGGGCATGTACTCCGGCTTCGAGCTGTGCGAGGCGGCGGCCTTGCCGGGCAAGGAGGAGTAC 
CTCGACTCGGAGAAATACCAGTTGCGTCCGCGCGACTACCAGGCGCCGGGCAACATCGTCGCCGAGATCGCC 
CGGCTCAACCGCATCCGCCGGGAAAACCCGGCATTGCAGACGCACCTCGGGTTCCAGGCCTACAACGCCTGG 
AACGACCGCATCCTGTATTTCGGCAAGCGCACCGCGGACCTCGCCAACTTCGTCCTGGTGGCGGTCTGCCTG 
GACCCGCACGAAGCCCAGGAGGCGCATTTCGAACTGCCGCTGTGGGAGTTCGGCCTGCCCGACGACGCCAGC 
CTCCAGGGCGAGGACCTGATGAACGGGCATCGCTGGGTCTGGCACGGCAAGGTCCAGTGGATGCGCATCGAA 
CCCTGGCACCTGCCGTTCGGCATCTGGCGCGTGCGGCGCGTCGACGCATAA