ViewGene
Locus Name:
GeneID:
Location:

GeneID:2914
TrivialName: PA14_39990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39990
PAO1 Ortholog Locus:PA1897
Sequence Length:768
Protein Length:255
Start: 3563689
Stop: 3564456
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05286.1|AE004615_9 (AE004615) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/255 (100%), Positives = 255/255 (100%)
Sequence:
ATGATTTATTACTTGATCGGAGTGGCGCTATTCATCTTCATGCTGGAACAGTTGGTTCCCGGCTGGAAATTG
CCCAAGGTGAGCACCTGGGTGGCCCGGGTGATCTTCCTCAACATCGTCCAGGTGTCGATCGCCCTGCTCGCC
GGCATCACCTGGAACAAATGGATGATGGGGCACAGCCTGCTGCACACCTCGGATGCCCTGCCACCACTGCTG
GCCGGCTTCGCCGCCTACTTCGTCAACACCTTCGTCACCTACTGGTGGCATCGCGCGCGCCACGCCAACGAC
ACGCTCTGGCGGCTGTTCCACCAGTTGCACCACGCGCCGCAACGCATCGAGGTATTCACCTCCTTCTACAAG
CATCCGACCGAGATGGTCTTCAACTCGCTGCTGGGCAGCTTCGTCGCCTACGTGGTGATGGGCATCAGCATC
GAGGCCGGCGCCTACTACATCATGTTCGCCGCGCTCGGCGAGATGTTCTACCACTCGAACCTGCGCACCCCG
CACGTCCTCGGCTACCTGTTCCAGCGCCCGGAGATGCACCGCATCCACCACCAGCGCGACCGCCACGAGTGC
AACTACAGCGACTTCCCGATCTGGGACATGTTGTTCGGCACCTACGAGAACCCCCGCCGCATCGACGAGCCG
CAGGGCTTCGCCGGCGACAAGGAGCAGCAGTTCGTCGACATGCTGCTGTTCCGCGACGTGCACAGCCTCCCC
GGAAAAACCCAGCCCGCTCCCGTCCTGGTCAAGCCCGACGTCAGGTGA
Translation:
MIYYLIGVALFIFMLEQLVPGWKLPKVSTWVARVIFLNIVQVSIALLAGITWNKWMMGHSLLHTSDALPPLL
AGFAAYFVNTFVTYWWHRARHANDTLWRLFHQLHHAPQRIEVFTSFYKHPTEMVFNSLLGSFVAYVVMGISI
EAGAYYIMFAALGEMFYHSNLRTPHVLGYLFQRPEMHRIHHQRDRHECNYSDFPIWDMLFGTYENPRRIDEP
QGFAGDKEQQFVDMLLFRDVHSLPGKTQPAPVLVKPDVR*
AnnotationID:2922GeneID:2914
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 09:09:39
Gene Name:
Confidence Code:3
GeneProduct:putative desaturase
Cell Localization:()
Synonyms:PA1897
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3000
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3000, ERG3, Sterol desaturase [Lipid metabolism]
CD-Length = 271 residues,  84.5% aligned
Score =  132 bits (332), Expect = 6e-32
Identities = 65/231 (28%), Positives = 92/231 (39%), Gaps = 8/231 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5831




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22973




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37033




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2914_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2914
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4716
                           PA1897_tr
                           translation of PA1897
                           255
                           99.99
                           99.99
                           0
                           1387.0
     

     
     
135545
                           gb|AAG05286.1|AE004615_9
                           (AE004615) hypothetical protein PA1897 [Pseudomonas aeruginosa PAO1]
                           255
                           99.99
                           99.99
                           0
                           1387.0
     

     






      

          
GC ORFID: 45916How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1897Glimmer Score: 

          
Start: 1390221Stop: 1389454

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1897 translation of PA1897Homolog Bit Score 538.0

          
Other Homologs:  t_PA1897 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTTATTACTTGATCGGAGTGGCGCTATTCATCTTCATGCTGGAACAGTTGGTTCCCGGCTGGAAATTG 
CCCAAGGTGAGCACCTGGGTGGCCCGGGTGATCTTCCTCAACATCGTCCAGGTGTCGATCGCCCTGCTCGCC 
GGCATCACCTGGAACAAATGGATGATGGGGCACAGCCTGCTGCACACCTCGGATGCCCTGCCACCACTGCTG 
GCCGGCTTCGCCGCCTACTTCGTCAACACCTTCGTCACCTACTGGTGGCATCGCGCGCGCCACGCCAACGAC 
ACGCTCTGGCGGCTGTTCCACCAGTTGCACCACGCGCCGCAACGCATCGAGGTATTCACCTCCTTCTACAAG 
CATCCGACCGAGATGGTCTTCAACTCGCTGCTGGGCAGCTTCGTCGCCTACGTGGTGATGGGCATCAGCATC 
GAGGCCGGCGCCTACTACATCATGTTCGCCGCGCTCGGCGAGATGTTCTACCACTCGAACCTGCGCACCCCG 
CACGTCCTCGGCTACCTGTTCCAGCGCCCGGAGATGCACCGCATCCACCACCAGCGCGACCGCCACGAGTGC 
AACTACAGCGACTTCCCGATCTGGGACATGTTGTTCGGCACCTACGAGAACCCCCGCCGCATCGACGAGCCG 
CAGGGCTTCGCCGGCGACAAGGAGCAGCAGTTCGTCGACATGCTGCTGTTCCGCGACGTGCACAGCCTCCCC 
GGAAAAACCCAGCCCGCTCCCGTCCTGGTCAAGCCCGACGTCAGGTGA