ViewGene
Locus Name:
GeneID:
Location:

GeneID:2908
TrivialName: PA14_07930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07930
PAO1 Ortholog Locus:PA0608
Sequence Length:819
Protein Length:272
Start: 682911
Stop: 683729
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03997.1|AE004497_4 (AE004497) probable phosphoglycolate phosphatase [Pseudomonas aeruginosa PAO1]
Identities = 271/272 (99%), Positives = 271/272 (99%)
Sequence:
ATGAGCGCTGCGGAGCCGTTCTTCGCCACGCGCCTGCCGCGTCTGGTGATGTTCGACCTGGATGGCACGTTG
GTCGATTCCGTTCCCGACCTCACCGCCGCGGTCGACAGCATGCTCGCCAGCCTCGGGCGGCCACCGGCGGGC
ATCGAGAAGGTCCGCCAGTGGATCGGTAACGGCGCGCGTGTGCTGGTGCGTCGCGCCCTGGCGGGAAGCATC
GAGCATGACGGCATTGGTGAGGAAGAAACCGAAGCCGCGCTGGCGCTGTTCATGGAGGCCTATGCCGACAGT
CATGCGCTCACCGAGGTCTACCCCGGCGTCGTCGACACCCTCAAGTGGCTCAAGCGCAACGGCGTGGAAATG
GCGCTGATCACCAACAAGCCGGAGCGCTTCGTCGCTCCGCTGCTGGATGAGATGAAGCTGGGTCGCTATTTC
CGCTGGATCATCGGCGGCGACACCCTGCCGCAGCAGAAGCCCGACCCGGCGGCGCTGCTGTTCGTGATGAAG
ATGGCCGGCATCGAGCCCGAAGATGCGTTGTTCGTCGGTGACTCGCGCAACGACGTGCTCGCCGCCAAGGCT
GCCGGTGTGCGCTGCGCGGCGCTGACCTATGGCTACAACCACGGCCGGCCGATCGCCGAGGAAGCGCCCACC
CTGGTCATCGACAACCTGCGCGACCTGCTGCCTTGCGCCGACCAGGCCGCTGAGATAGTGTTGCCGGACGAC
TCCCTTTCCCCCTCCGACCAGCGAGATCAAGCCGTGGCGGTCAGCAAACTCTGGATGAAGGTCATCAAGGCC
CTGGCGCGTTGGCGCTGGCGCGCCTGA
Translation:
MSAAEPFFATRLPRLVMFDLDGTLVDSVPDLTAAVDSMLASLGRPPAGIEKVRQWIGNGARVLVRRALAGSI
EHDGIGEEETEAALALFMEAYADSHALTEVYPGVVDTLKWLKRNGVEMALITNKPERFVAPLLDEMKLGRYF
RWIIGGDTLPQQKPDPAALLFVMKMAGIEPEDALFVGDSRNDVLAAKAAGVRCAALTYGYNHGRPIAEEAPT
LVIDNLRDLLPCADQAAEIVLPDDSLSPSDQRDQAVAVSKLWMKVIKALARWRWRA*
AnnotationID:2916GeneID:2908
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:05
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoglycolate phosphatase
Cell Localization:()
Synonyms:gph
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0546,pfam00702
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66046.1|AE016233_12 (AE016775) phosphoglycolate phosphatase [Pseudomonas putida KT2440]
          Length = 272

 Score =  389 bits (999), Expect = e-107
 Identities = 196/274 (71%), Positives = 223/274 (81%), Gaps = 4/274 (1%)

>gb|AAO54109.1| (AE016857) phosphoglycolate phosphatase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 266

 Score =  379 bits (974), Expect = e-105
 Identities = 188/266 (70%), Positives = 215/266 (80%), Gaps = 2/266 (0%)

>dbj|BAC61068.1| (AP005082) phosphoglycolate phosphatase [Vibrio parahaemolyticus]
          Length = 228

 Score =  189 bits (479), Expect = 2e-47
 Identities = 98/215 (45%), Positives = 140/215 (65%), Gaps = 2/215 (0%)






 
Structural Features:
COG0546, Gph, Predicted phosphatases
CD-Length = 220 residues,  98.2% aligned
Score =  185 bits (470), Expect = 5e-48
Identities = 93/219 (42%), Positives = 133/219 (60%), Gaps = 3/219 (1%)

pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.
CD-Length = 197 residues, 100.0% aligned
Score =  110 bits (274), Expect = 2e-25
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 7/197 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5819




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22961




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33894




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2908_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2908
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4709
                           PA0608_tr
                           translation of PA0608
                           272
                           99.63
                           99.63
                           0
                           1392.0
     

     
     
135463
                           gb|AAG03997.1|AE004497_4
                           (AE004497) probable phosphoglycolate phosphatase [Pseudomonas aeruginosa PAO1]
                           272
                           99.63
                           99.63
                           0
                           1392.0
     

     
     
135464
                           dbj|BAA83143.1|
                           (AB030825) phosphoglycolate phosphatase [Pseudomonas aeruginosa]
                           272
                           99.63
                           99.63
                           0
                           1392.0
     

     
     
135465
                           gb|AAN66046.1|AE016233_12
                           (AE016775) phosphoglycolate phosphatase [Pseudomonas putida KT2440]
                           274
                           71.53
                           81.38
                           4
                           1005.0
     

     
     
135466
                           gb|AAO54109.1|
                           (AE016857) phosphoglycolate phosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           273
                           68.86
                           78.75
                           8
                           978.0
     

     






      

          
GC ORFID: 45910How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0608Glimmer Score: 

          
Start: 6484254Stop: 6485072

          
Length: 819


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0608 translation of PA0608Homolog Bit Score 540.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2140 (ORF: BLASTX 380.0), t_PA0608 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTGCGGAGCCGTTCTTCGCCACGCGCCTGCCGCGTCTGGTGATGTTCGACCTGGATGGCACGTTG 
GTCGATTCCGTTCCCGACCTCACCGCCGCGGTCGACAGCATGCTCGCCAGCCTCGGGCGGCCACCGGCGGGC 
ATCGAGAAGGTCCGCCAGTGGATCGGTAACGGCGCGCGTGTGCTGGTGCGTCGCGCCCTGGCGGGAAGCATC 
GAGCATGACGGCATTGGTGAGGAAGAAACCGAAGCCGCGCTGGCGCTGTTCATGGAGGCCTATGCCGACAGT 
CATGCGCTCACCGAGGTCTACCCCGGCGTCGTCGACACCCTCAAGTGGCTCAAGCGCAACGGCGTGGAAATG 
GCGCTGATCACCAACAAGCCGGAGCGCTTCGTCGCTCCGCTGCTGGATGAGATGAAGCTGGGTCGCTATTTC 
CGCTGGATCATCGGCGGCGACACCCTGCCGCAGCAGAAGCCCGACCCGGCGGCGCTGCTGTTCGTGATGAAG 
ATGGCCGGCATCGAGCCCGAAGATGCGTTGTTCGTCGGTGACTCGCGCAACGACGTGCTCGCCGCCAAGGCT 
GCCGGTGTGCGCTGCGCGGCGCTGACCTATGGCTACAACCACGGCCGGCCGATCGCCGAGGAAGCGCCCACC 
CTGGTCATCGACAACCTGCGCGACCTGCTGCCTTGCGCCGACCAGGCCGCTGAGATAGTGTTGCCGGACGAC 
TCCCTTTCCCCCTCCGACCAGCGAGATCAAGCCGTGGCGGTCAGCAAACTCTGGATGAAGGTCATCAAGGCC 
CTGGCGCGTTGGCGCTGGCGCGCCTGA