ViewGene
Locus Name:
GeneID:
Location:

GeneID:2860
TrivialName: PA14_27090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27090
PAO1 Ortholog Locus:PA2863
Sequence Length:867
Protein Length:288
Start: 2353959
Stop: 2353093
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06251.1|AE004712_11 (AE004712) lipase modulator protein [Pseudomonas aeruginosa PAO1]
Identities = 287/288 (99%), Positives = 287/288 (99%)
Sequence:
GTGCCGGCCCCCCAGGTCATGCCGGCCAAGGTCGCGCCGCTGCCAACCTCCTTCAGGGGCACCAGCGTCGAT
GGCAGTTTCAGCGTCGACGCCAGCGGCAACCTGCTGATCACCCGCGACATCCGCAACCTGTTCGACTACTTC
CTCAGCGCCGTCGGCGAAGAGCCCCTGCAGCAAAGCCTGGACCGCCTGCGCGCCTACATCGCCGCCGAACTC
CAGGAGCCGGCGCGCGGCCAGGCGTTGGCGCTGATGCAGCAATACATCGACTACAAGAAGGAACTGGTGCTG
CTCGAACGCGACCTGCCGCGCCTGGCCGACCTCGACGCCCTGCGCCAGCGGGAAGCCGCGGTGAAAGCCCTG
CGCGCGCGGATCTTCAGCAACGAAGCGCACGTGGCGTTCTTCGCCGACGAGGAAACCTACAACCAGTTCACC
CTGGAGCGCCTGGCGATCCGCCAGGACGGCAAGCTCAGCGCCGAGGAAAAGGCCGCCGCCATCGACCGCCTG
CGCGCCAGCCTGCCGGAAGACCAGCAGGAAAGCGTGCTGCCGCAACTGCAAAGCGAACTGCAGCAGCAGACC
GCCGCCCTCCAGGCCGCTGGCGCCGGCCCGGAAGCCATCCGCCAGATGCGTCAGCAACTGGTGGGCGCCGAA
GCCACCACCCGCCTGGAGCAACTCGATCGGCAACGCTCGGCCTGGAAGGGCCGGCTGGACGACTATTTCGCC
GAGAAGAGCCGGATCGAAGGCAATGCCGGGCTGAGCGAAGCCGACCGCCGCGCGGCGGTCGAACGCCTGGCC
GAGGAGCGCTTCAGCGAACAGGAACGCTTGCGCCTGGGCGCGCTGGAACAGATGCGCCAGGCCGAGCAGCGC
TGA
Translation:
MPAPQVMPAKVAPLPTSFRGTSVDGSFSVDASGNLLITRDIRNLFDYFLSAVGEEPLQQSLDRLRAYIAAEL
QEPARGQALALMQQYIDYKKELVLLERDLPRLADLDALRQREAAVKALRARIFSNEAHVAFFADEETYNQFT
LERLAIRQDGKLSAEEKAAAIDRLRASLPEDQQESVLPQLQSELQQQTAALQAAGAGPEAIRQMRQQLVGAE
ATTRLEQLDRQRSAWKGRLDDYFAEKSRIEGNAGLSEADRRAAVERLAEERFSEQERLRLGALEQMRQAEQR
*
AnnotationID:2868GeneID:2860
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:04
Gene Name:lipH
Confidence Code:1
GeneProduct:lipase modulator protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03280
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein.







   
Genomic Context:






   
Comment:


















    ReferenceID:14681




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22866




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36202




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2860_cdd.html


    		




 
URL:

















    ReferenceID:36408




  
Author/Investigator(s):
        Wohlfarth S, Hoesche C, Strunk C, Winkler UK.





  
Title:
        Molecular genetics of the extracellular lipase of Pseudomonas aeruginosa PAO1.




  
PubMed:
        1512563


MedLine:
        




    
Source:
J Gen Microbiol. 1992 Jul;138 ( Pt 7):1325-35.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1512563









           
Homologs By Global Alignment 

           

       



     
Gene ID:2860
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4650
                           PA2863_tr
                           translation of PA2863
                           288
                           99.65
                           99.65
                           0
                           1407.0
     

     
     
134060
                           gb|AAG06251.1|AE004712_11
                           (AE004712) lipase modulator protein [Pseudomonas aeruginosa PAO1]
                           288
                           99.30
                           99.65
                           0
                           1404.0
     

     
     
134061
                           emb|CAA44998.1|
                           (X63391) hypothetical protein [Pseudomonas aeruginosa]
                           288
                           97.56
                           97.56
                           6
                           1376.0
     

     
     
134058
                           dbj|BAA09136.1|
                           (D50588) lipase modulator protein [Pseudomonas aeruginosa]
                           340
                           84.41
                           84.41
                           52
                           1407.0
     

     
     
134059
                           dbj|BAA23129.1|
                           (AB008452) proposal modulator or activator protein for lipase [Pseudomonas aeruginosa]
                           340
                           84.41
                           84.41
                           52
                           1407.0
     

     






      

          
GC ORFID: 45862How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2863Glimmer Score: 

          
Start: 2599967Stop: 2600833

          
Length: 867


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2863 translation of PA2863Homolog Bit Score 546.0

          
Other Homologs:  t_PA2863 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGGCCCCCCAGGTCATGCCGGCCAAGGTCGCGCCGCTGCCAACCTCCTTCAGGGGCACCAGCGTCGAT 
GGCAGTTTCAGCGTCGACGCCAGCGGCAACCTGCTGATCACCCGCGACATCCGCAACCTGTTCGACTACTTC 
CTCAGCGCCGTCGGCGAAGAGCCCCTGCAGCAAAGCCTGGACCGCCTGCGCGCCTACATCGCCGCCGAACTC 
CAGGAGCCGGCGCGCGGCCAGGCGTTGGCGCTGATGCAGCAATACATCGACTACAAGAAGGAACTGGTGCTG 
CTCGAACGCGACCTGCCGCGCCTGGCCGACCTCGACGCCCTGCGCCAGCGGGAAGCCGCGGTGAAAGCCCTG 
CGCGCGCGGATCTTCAGCAACGAAGCGCACGTGGCGTTCTTCGCCGACGAGGAAACCTACAACCAGTTCACC 
CTGGAGCGCCTGGCGATCCGCCAGGACGGCAAGCTCAGCGCCGAGGAAAAGGCCGCCGCCATCGACCGCCTG 
CGCGCCAGCCTGCCGGAAGACCAGCAGGAAAGCGTGCTGCCGCAACTGCAAAGCGAACTGCAGCAGCAGACC 
GCCGCCCTCCAGGCCGCTGGCGCCGGCCCGGAAGCCATCCGCCAGATGCGTCAGCAACTGGTGGGCGCCGAA 
GCCACCACCCGCCTGGAGCAACTCGATCGGCAACGCTCGGCCTGGAAGGGCCGGCTGGACGACTATTTCGCC 
GAGAAGAGCCGGATCGAAGGCAATGCCGGGCTGAGCGAAGCCGACCGCCGCGCGGCGGTCGAACGCCTGGCC 
GAGGAGCGCTTCAGCGAACAGGAACGCTTGCGCCTGGGCGCGCTGGAACAGATGCGCCAGGCCGAGCAGCGC 
TGA