ViewGene
Locus Name:
GeneID:
Location:

GeneID:2853
TrivialName: PA14_58520
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58520
PAO1 Ortholog Locus:
Sequence Length:927
Protein Length:308
Start: 5211797
Stop: 5210872
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID2853 (PA14_58520) replaced by GeneID7403 (PA14_58515). Homology: gb|AAG07897.1|AE004864_9 (AE004864) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 265/274 (96%), Positives = 269/274 (98%)
Sequence:
ATGGTTTGTGGGTCGTCAAGGCGGGTCCGCAGAGCCTGCTGCAGGACGACGGCCGGCGCGGCTGGCAGCACC
TCGGCGTATCCCCGGGCGGCCCTCtggacccgCCAGGCGGCAGCCTGGGCCAATCGTCTGCTCGGTAATCCC
tgGGGGACGCCATTGCTGGAAATCGCTTTCGGCGGCTTGGCGCTGGAGTGCAGGGTGGAGGCGACCTGGCTG
GCGCTGACCGGAGCGCGCCTGGCGCTGACGGTGGACGGTCGCGAATGCCTGCCCTGGAGTCGCTTCCGGGTC
CGCCGCGGGCAACGCATCGAACTGGGCTTCGCCGAGGCCGGGCAGCGTGCCTACCTGGCCTGCGCCGGCGGT
TTCCGGGCGAGGCCGGTACTGGGCAGCGTCGCCTGCCAGGTTCGCGACGGGCTCGGCGGTTTACAGGGCGAT
GGCCGGATCCTGGCGGAGGGCGATTGCCTGCCGTGTGCCGAAGCGGGAGCGGCGTGTCCGTGGGATGCCAGC
GTGCCCTGGCGTTTCCAGCCGGACTACCGGCAGCAGCGGCCCTTGCGCGTGCTGCTCGGCGGCGATGCGGCG
GCCTTCGACGCAGCCAGCCGGCGAGCCTTCTTCGCCAGCGCCTGGCGAATCAGCCCGCGGTCCGATCGCATG
GGCGTCCGCCTGGCCGGCAAGCCACTGCGCGGGGCGCCGCGCGCCTGGTCGCAGGGCGTGGTGGAGGGCGCT
ATCCAGGTTCCGCCCGATGGCCAACCCATCGTGCTGATGGCCGACCGCCAGAGCATGGGCGGCTATCCGCTG
CTGGGCTTCGTCCATCCACTGGACCTCTCGCGCCTGGCGCAAAGCCCCGCGCATAGCGAGGTAACCTTCGTC
GAGAGCGACCTGGCGACGCAGCAGGCCGATCTGCTGCGCTTCTACCGCTTCTTCCGCGGCTGA
Translation:
MVCGSSRRVRRACCRTTAGAAGSTSAYPRAALWTRQAAAWANRLLGNPWGTPLLEIAFGGLALECRVEATWL
ALTGARLALTVDGRECLPWSRFRVRRGQRIELGFAEAGQRAYLACAGGFRARPVLGSVACQVRDGLGGLQGD
GRILAEGDCLPCAEAGAACPWDASVPWRFQPDYRQQRPLRVLLGGDAAAFDAASRRAFFASAWRISPRSDRM
GVRLAGKPLRGAPRAWSQGVVEGAIQVPPDGQPIVLMADRQSMGGYPLLGFVHPLDLSRLAQSPAHSEVTFV
ESDLATQQADLLRFYRFFRG*
AnnotationID:2861GeneID:2853
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 12:12:00
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1984,pfam02626
Secondary Functional Category(ies):
EC Number:3.5.1.54
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1984, DUR1, Allophanate hydrolase subunit 2 
[Amino acid transport and metabolism]
CD-Length = 314 residues,  86.6% aligned
Score =  290 bits (743), Expect = 4e-79
Identities = 125/276 (45%), Positives = 155/276 (56%), Gaps = 7/276 (2%)

pfam02626, AHS2, Allophanate hydrolase subunit 2. 
CD-Length = 282 residues,  95.7% aligned
Score =  184 bits (469), Expect = 2e-47
Identities = 105/273 (38%), Positives = 140/273 (51%), Gaps = 6/273 (2%)






   
Genomic Context:






   
Comment:
GeneID2853 (PA14_58520) replaced by GeneID7403 (PA14_58515).


















    ReferenceID:5709




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22852




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31553




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2853_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2853
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4620
                           PA4509_tr
                           translation of PA4509
                           326
                           82.51
                           84.35
                           35
                           1399.0
     

     
     
132928
                           gb|AAG07897.1|AE004864_9
                           (AE004864) hypothetical protein PA4509 [Pseudomonas aeruginosa PAO1]
                           326
                           82.51
                           84.35
                           35
                           1399.0
     

     
     
132929
                           gb|AAF96676.1|
                           (AE004406) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           330
                           39.09
                           49.39
                           43
                           496.0
     

     
     
132931
                           gb|AAN70148.1|AE016654_5
                           (AE016791) urea amidolyase-related protein [Pseudomonas putida KT2440]
                           320
                           38.75
                           50.62
                           27
                           472.0
     

     
     
4621
                           PA2110_tr
                           translation of PA2110
                           331
                           38.36
                           48.03
                           41
                           489.0
     

     






      

          
GC ORFID: 45855How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4509Glimmer Score: 

          
Start: 4475476Stop: 4474550

          
Length: 927


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4509 translation of PA4509Homolog Bit Score 547.0

          
Other Homologs:  t_PA4509 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTTGTGGGTCGTCAAGGCGGGTCCGCAGAGCCTGCTGCAGGACGACGGCCGGCGCGGCTGGCAGCACC 
TCGGCGTATCCCCGGGCGGCCCTCtggacccgCCAGGCGGCAGCCTGGGCCAATCGTCTGCTCGGTAATCCC 
tgGGGGACGCCATTGCTGGAAATCGCTTTCGGCGGCTTGGCGCTGGAGTGCAGGGTGGAGGCGACCTGGCTG 
GCGCTGACCGGAGCGCGCCTGGCGCTGACGGTGGACGGTCGCGAATGCCTGCCCTGGAGTCGCTTCCGGGTC 
CGCCGCGGGCAACGCATCGAACTGGGCTTCGCCGAGGCCGGGCAGCGTGCCTACCTGGCCTGCGCCGGCGGT 
TTCCGGGCGAGGCCGGTACTGGGCAGCGTCGCCTGCCAGGTTCGCGACGGGCTCGGCGGTTTACAGGGCGAT 
GGCCGGATCCTGGCGGAGGGCGATTGCCTGCCGTGTGCCGAAGCGGGAGCGGCGTGTCCGTGGGATGCCAGC 
GTGCCCTGGCGTTTCCAGCCGGACTACCGGCAGCAGCGGCCCTTGCGCGTGCTGCTCGGCGGCGATGCGGCG 
GCCTTCGACGCAGCCAGCCGGCGAGCCTTCTTCGCCAGCGCCTGGCGAATCAGCCCGCGGTCCGATCGCATG 
GGCGTCCGCCTGGCCGGCAAGCCACTGCGCGGGGCGCCGCGCGCCTGGTCGCAGGGCGTGGTGGAGGGCGCT 
ATCCAGGTTCCGCCCGATGGCCAACCCATCGTGCTGATGGCCGACCGCCAGAGCATGGGCGGCTATCCGCTG 
CTGGGCTTCGTCCATCCACTGGACCTCTCGCGCCTGGCGCAAAGCCCCGCGCATAGCGAGGTAACCTTCGTC 
GAGAGCGACCTGGCGACGCAGCAGGCCGATCTGCTGCGCTTCTACCGCTTCTTCCGCGGCTGA