ViewGene
Locus Name:
GeneID:
Location:

GeneID:2852
TrivialName: PA14_42140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42140
PAO1 Ortholog Locus:PA1732
Sequence Length:801
Protein Length:266
Start: 3759837
Stop: 3759037
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05121.1|AE004599_6 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 264/266 (99%), Positives = 265/266 (99%)
Sequence:
ATGAGACTCTCGATCACCCACGACACCACCTATCGCTACGAAGACCGGGTGCGCGCCAGCATCCAGTACCTG
CGCCTGACCCCGCAGGACAGCGAGCGCCAGCACGTGGTCGATTGGCGCCTGGACCTGCCGCGCCCGGCGCGG
CCGCTGCGCGATCCGTACGGCAACATCCTGCACGTCCTGACCCTGGACGAACCGCATGAGTCGGTCCTGATC
GCCGCCCACGGCCTGGTCGAGATCGACGAGGAGCGCGAGGTGGAGCACGATCGCCAGTCGCCGTTGCCGTTC
CTGCGCAGCACCCGCCTGACCGGCGCCGATGCCGAGATGCGCGCCTTCGCCGAACGCGCCATGGGCGGCCGC
AAGGACCGCGGCGGCCTGCTCGACCTGATGCATGCGCTGCACGAGCATATCCTCTACCAGCCGGGGGCGACC
CGCGTCGACAGCACCGCCATCGAGGCCTTCGGCGCACGCGCCGGGGTCTGCCAGGACCATGCCCATGCCTTC
CTCGCCTGCATCCGCAGCCAGGGTGTGCCGGGGCGCTATGTCTCCGGCTACCTCTACACCGAGGACGACACG
CACCTGGCCAGCCATGCCTGGGCCGAGGCCTGGCTCGGCGACGGCTGGTACAGCTTCGACGTGACCAACCGG
CTCGGCCGTCCGGAGCGCCATCTCAAGCTGGCCGTCGGCCTCGACTACCTGGATGCCTGCCCGGTGCGTGGC
TTGCGCCGTGGCGGCGGTTGCGAGCAGATGCATGCGCGGGTGCTGGTCAGCGCGCCGCTGCTGCAGGTGCAG
CAACAGTGA
Translation:
MRLSITHDTTYRYEDRVRASIQYLRLTPQDSERQHVVDWRLDLPRPARPLRDPYGNILHVLTLDEPHESVLI
AAHGLVEIDEEREVEHDRQSPLPFLRSTRLTGADAEMRAFAERAMGGRKDRGGLLDLMHALHEHILYQPGAT
RVDSTAIEAFGARAGVCQDHAHAFLACIRSQGVPGRYVSGYLYTEDDTHLASHAWAEAWLGDGWYSFDVTNR
LGRPERHLKLAVGLDYLDACPVRGLRRGGGCEQMHARVLVSAPLLQVQQQ*
AnnotationID:2860GeneID:2852
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:36
Gene Name:
Confidence Code:3
GeneProduct:putative transglutaminase-like domain protein
Cell Localization:()
Synonyms:PA1732
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1305
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55579.1| (AE016863) transglutaminase-like domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 276

 Score =  372 bits (956), Expect = e-103
 Identities = 176/257 (68%), Positives = 208/257 (80%)

>gb|AAN68294.1|AE016463_8 (AE016784) transglutaminase-like superfamily domain protein
           [Pseudomonas putida KT2440]
          Length = 259

 Score =  345 bits (885), Expect = 2e-94
 Identities = 170/256 (66%), Positives = 191/256 (74%)






 
Structural Features:
COG1305, Transglutaminase-like_enzymes, Transglutaminase-like enzymes, 
putative cysteine proteases 
[Amino acid transport and metabolism]
CD-Length = 319 residues,  89.0% aligned
Score =  139 bits (351), Expect = 2e-34
Identities = 89/284 (31%), Positives = 122/284 (42%), Gaps = 36/284 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5707




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22850




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37174




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2852_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2852
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4619
                           PA1732_tr
                           translation of PA1732
                           266
                           99.24
                           99.62
                           0
                           1409.0
     

     
     
132922
                           gb|AAG05121.1|AE004599_6
                           (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           266
                           99.24
                           99.62
                           0
                           1409.0
     

     
     
132923
                           gb|AAO55579.1|
                           (AE016863) transglutaminase-like domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           277
                           65.34
                           77.61
                           12
                           960.0
     

     
     
132924
                           gb|AAN68294.1|AE016463_8
                           (AE016784) transglutaminase-like superfamily domain protein [Pseudomonas putida KT2440]
                           266
                           63.90
                           71.80
                           7
                           882.0
     

     
     
132926
                           emb|CAE27616.1|
                           (BX572600) Transglutaminase-like domain [Rhodopseudomonas palustris CGA009]
                           276
                           43.11
                           54.34
                           11
                           501.0
     

     






      

          
GC ORFID: 45854How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1732Glimmer Score: 

          
Start: 1194072Stop: 1194872

          
Length: 801


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1732 translation of PA1732Homolog Bit Score 547.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene874 (ORF: BLASTX 372.0), t_PA1732 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGACTCTCGATCACCCACGACACCACCTATCGCTACGAAGACCGGGTGCGCGCCAGCATCCAGTACCTG 
CGCCTGACCCCGCAGGACAGCGAGCGCCAGCACGTGGTCGATTGGCGCCTGGACCTGCCGCGCCCGGCGCGG 
CCGCTGCGCGATCCGTACGGCAACATCCTGCACGTCCTGACCCTGGACGAACCGCATGAGTCGGTCCTGATC 
GCCGCCCACGGCCTGGTCGAGATCGACGAGGAGCGCGAGGTGGAGCACGATCGCCAGTCGCCGTTGCCGTTC 
CTGCGCAGCACCCGCCTGACCGGCGCCGATGCCGAGATGCGCGCCTTCGCCGAACGCGCCATGGGCGGCCGC 
AAGGACCGCGGCGGCCTGCTCGACCTGATGCATGCGCTGCACGAGCATATCCTCTACCAGCCGGGGGCGACC 
CGCGTCGACAGCACCGCCATCGAGGCCTTCGGCGCACGCGCCGGGGTCTGCCAGGACCATGCCCATGCCTTC 
CTCGCCTGCATCCGCAGCCAGGGTGTGCCGGGGCGCTATGTCTCCGGCTACCTCTACACCGAGGACGACACG 
CACCTGGCCAGCCATGCCTGGGCCGAGGCCTGGCTCGGCGACGGCTGGTACAGCTTCGACGTGACCAACCGG 
CTCGGCCGTCCGGAGCGCCATCTCAAGCTGGCCGTCGGCCTCGACTACCTGGATGCCTGCCCGGTGCGTGGC 
TTGCGCCGTGGCGGCGGTTGCGAGCAGATGCATGCGCGGGTGCTGGTCAGCGCGCCGCTGCTGCAGGTGCAG 
CAACAGTGA