ViewGene
Locus Name:
GeneID:
Location:

GeneID:2835
TrivialName: PA14_68620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68620
PAO1 Ortholog Locus:PA5194
Sequence Length:804
Protein Length:267
Start: 6119341
Stop: 6120144
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08579.1|AE004932_6 (AE004932) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/267 (99%), Positives = 266/267 (99%)
Sequence:
ATGGATAATGCCTCTCCGTTCCAAGCGGCCTGGCAATGGCGCAAGTTCGCCACCTGTCATCTTCTGGCGCTC
CTGCTGCTGATCCTGTGGCTCTGGGGCCCCACCCGCGAGCTGATGAACGGCTTCGACTTCTGGCTCTTCGAC
AAGCTCAACGGCTCCCTCGCCCTCAACGAAACCTGGCTGAAACTCTGGGGCCTGCTCAGTACCCGACCGTTC
GACGCGGTGGTCGGGGTGATCCTGCTCTGCCTGCTGATTCGCGGCGACTGGCTGCTGCCAGCGAACCAGGTA
CGGCGGCTGACCTTCGGCTTCATCGTGACCCTGCTGATCCTGGTGGTGATCCGCGTGCTCTACGCCAAGATC
GCCCACCACCTGCACTGGCAGCACGCCAGCCTGTCGATGCTGATGGACAAGGCCATCCACCTCAGCGACCAC
TTCCCGGACTGGGAACGCGTGTGGGAAATCAAGGACCGCTCCAAGCGCAGCTTCCCCGGCGACCACGCCTCG
GTGCTGCTGGTCTGGGCGCTGTTCATGTCGCTGTTCGCCCGCCGCGCCGGGCAGTTCCTGCTGATCTGGACC
CTGGCCGTGCTGTTCATGCTGCCGCGCCTGGTAGCCGGCGCGCACTGGGGCCAGGACGACTACATCGGCGGC
CTGCAGATGGCCCTGCTGGCCCTCGCCTGGGGCTGCTACACACCGCTGGCGGCGAAGGCCAGCGGCTGGCTG
GTGCAGGTGACCGAACCGCTGTTCCGCCTGCTGGCGAAATTGCCGCTGATCGGCCGCCTCGGCGTGGTCCGC
GACTCGGCCTGA
Translation:
MDNASPFQAAWQWRKFATCHLLALLLLILWLWGPTRELMNGFDFWLFDKLNGSLALNETWLKLWGLLSTRPF
DAVVGVILLCLLIRGDWLLPANQVRRLTFGFIVTLLILVVIRVLYAKIAHHLHWQHASLSMLMDKAIHLSDH
FPDWERVWEIKDRSKRSFPGDHASVLLVWALFMSLFARRAGQFLLIWTLAVLFMLPRLVAGAHWGQDDYIGG
LQMALLALAWGCYTPLAAKASGWLVQVTEPLFRLLAKLPLIGRLGVVRDSA*
AnnotationID:2843GeneID:2835
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5194
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5673




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22816




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34880




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2835_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2835
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4596
                           PA5194_tr
                           translation of PA5194
                           267
                           99.62
                           99.62
                           0
                           1418.0
     

     
     
132439
                           gb|AAG08579.1|AE004932_6
                           (AE004932) hypothetical protein PA5194 [Pseudomonas aeruginosa PAO1]
                           267
                           99.62
                           99.62
                           0
                           1418.0
     

     
     
132440
                           gb|AAN65883.1|AE016216_4
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           267
                           58.80
                           71.53
                           3
                           824.0
     

     






      

          
GC ORFID: 45837How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5194Glimmer Score: 

          
Start: 5383027Stop: 5383830

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5194 translation of PA5194Homolog Bit Score 550.0

          
Other Homologs:  t_PA5194 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATAATGCCTCTCCGTTCCAAGCGGCCTGGCAATGGCGCAAGTTCGCCACCTGTCATCTTCTGGCGCTC 
CTGCTGCTGATCCTGTGGCTCTGGGGCCCCACCCGCGAGCTGATGAACGGCTTCGACTTCTGGCTCTTCGAC 
AAGCTCAACGGCTCCCTCGCCCTCAACGAAACCTGGCTGAAACTCTGGGGCCTGCTCAGTACCCGACCGTTC 
GACGCGGTGGTCGGGGTGATCCTGCTCTGCCTGCTGATTCGCGGCGACTGGCTGCTGCCAGCGAACCAGGTA 
CGGCGGCTGACCTTCGGCTTCATCGTGACCCTGCTGATCCTGGTGGTGATCCGCGTGCTCTACGCCAAGATC 
GCCCACCACCTGCACTGGCAGCACGCCAGCCTGTCGATGCTGATGGACAAGGCCATCCACCTCAGCGACCAC 
TTCCCGGACTGGGAACGCGTGTGGGAAATCAAGGACCGCTCCAAGCGCAGCTTCCCCGGCGACCACGCCTCG 
GTGCTGCTGGTCTGGGCGCTGTTCATGTCGCTGTTCGCCCGCCGCGCCGGGCAGTTCCTGCTGATCTGGACC 
CTGGCCGTGCTGTTCATGCTGCCGCGCCTGGTAGCCGGCGCGCACTGGGGCCAGGACGACTACATCGGCGGC 
CTGCAGATGGCCCTGCTGGCCCTCGCCTGGGGCTGCTACACACCGCTGGCGGCGAAGGCCAGCGGCTGGCTG 
GTGCAGGTGACCGAACCGCTGTTCCGCCTGCTGGCGAAATTGCCGCTGATCGGCCGCCTCGGCGTGGTCCGC 
GACTCGGCCTGA