ViewGene
Locus Name:
GeneID:
Location:

GeneID:2803
TrivialName: PA14_61680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61680
PAO1 Ortholog Locus:PA4664
Sequence Length:831
Protein Length:276
Start: 5504426
Stop: 5503596
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08051.1|AE004880_7 (AE004880) probable methyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 276/276 (100%), Positives = 276/276 (100%)
Sequence:
ATGACCACTATCTGTACCCTTCTCAAGGATTCCCAACTGCCCGATTCGCCCAGCGCCCGGCTCGACACCGAG
TTGCTGCTGGCGGCGGCGATGGGCAAGCCGCGCAGCTTCCTGCGTACCTGGCCGGAGCGCATCGTGCCGCGC
GAGGCCAACGAGCGGTTCGACGACTGGATCGCCCGTCGGCGCAACGGCGAACCGGTGGCCTACATCCTTGGC
CACCAGGGCTTCTGGAGCCTGGACCTGGAGGTCGCGCCACACACACTGATCCCGCGCCCGGACACCGAACTG
CTGGTGGAAACCGCGCTGGCGACCCTCGCGGCGGACACCGCTACGGTGCTCGACCTGGGCACCGGCACCGGC
GCCATCGCCCTGGCCCTGGCCAGCGAGCGGCCGCTGTGGACAGTGACTGCGGTGGACCGTGTGGAAGAGGCC
GTGGCGCTGGCCGAGCGCAATCGCCAGCGGCTGCTCCTGGAGAACGTCGAGGTGCGCCGCAGCCACTGGTTC
TCCGCCCTCGATGGCCGGCGCTTCCGGATGATCGTCGGCAATCCGCCGTACATCCCTGCCAGCGACCCGCAC
CTGAGCGAGGGCGACGTGCGTTTCGAGCCGAAGAGCGCGCTGGTCGCGGGTAGCGATGGCCTCGACGACATC
CGCCAGATCGTCGCCCAGGCGCCGCGGCATTTGCTGGACGAAGGCTGGCTGCTGCTCGAGCACGGCTATGAT
CAAGGGGCGGCGGTGCGCGAACTGCTCGGCGCCCGCGGCTTCGCCGGGGTACATACGTTGCGCGACCTCGGC
GGCAACGAGCGGATCACACTCGGACAATGGGCATGCTGA
Translation:
MTTICTLLKDSQLPDSPSARLDTELLLAAAMGKPRSFLRTWPERIVPREANERFDDWIARRRNGEPVAYILG
HQGFWSLDLEVAPHTLIPRPDTELLVETALATLAADTATVLDLGTGTGAIALALASERPLWTVTAVDRVEEA
VALAERNRQRLLLENVEVRRSHWFSALDGRRFRMIVGNPPYIPASDPHLSEGDVRFEPKSALVAGSDGLDDI
RQIVAQAPRHLLDEGWLLLEHGYDQGAAVRELLGARGFAGVHTLRDLGGNERITLGQWAC*
AnnotationID:2811GeneID:2803
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 06:06:05
Gene Name:
Confidence Code:3
GeneProduct:putative methyl transferase
Cell Localization:()
Synonyms:PA4664
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative protoporphyrinogen oxidase
Functional Category Confidence Code:5
COGs:COG2890
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66359.1|AE016264_3 (AE016776) methyl transferase [Pseudomonas putida KT2440]
          Length = 276

 Score =  385 bits (990), Expect = e-106
 Identities = 197/276 (71%), Positives = 217/276 (78%)

>gb|AAO54639.1| (AE016859) hemK protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 277

 Score =  376 bits (965), Expect = e-104
 Identities = 192/277 (69%), Positives = 218/277 (78%), Gaps = 1/277 (0%)

>emb|CAD02130.1| (AL627271) HemK protein, putative protoporphyrinogen oxidase
           [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 277

 Score =  271 bits (694), Expect = 2e-72
 Identities = 143/264 (54%), Positives = 180/264 (68%)






 
Structural Features:
COG2890, HemK, Methylase of polypeptide chain release factors 
[Translation, ribosomal structure and biogenesis]
CD-Length = 280 residues,  98.6% aligned
Score =  271 bits (695), Expect = 5e-74
Identities = 132/277 (47%), Positives = 161/277 (58%), Gaps = 5/277 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5609




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22752




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37596




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2803_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2803
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4546
                           PA4664_tr
                           translation of PA4664
                           276
                           99.99
                           99.99
                           0
                           1431.0
     

     
     
130781
                           gb|AAG08051.1|AE004880_7
                           (AE004880) probable methyl transferase [Pseudomonas aeruginosa PAO1]
                           276
                           99.99
                           99.99
                           0
                           1431.0
     

     
     
130782
                           gb|AAN66359.1|AE016264_3
                           (AE016776) methyl transferase [Pseudomonas putida KT2440]
                           276
                           71.37
                           78.62
                           0
                           990.0
     

     
     
130783
                           gb|AAO54639.1|
                           (AE016859) hemK protein [Pseudomonas syringae pv. tomato str. DC3000]
                           277
                           69.31
                           78.70
                           1
                           967.0
     

     
     
130787
                           gb|AAF95323.1|
                           (AE004289) hemK protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           286
                           52.44
                           63.28
                           10
                           703.0
     

     






      

          
GC ORFID: 45805How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4664Glimmer Score: 

          
Start: 4768106Stop: 4767276

          
Length: 831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4664 translation of PA4664Homolog Bit Score 555.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4297 (ORF: BLASTX 381.0), t_PA4664 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACTATCTGTACCCTTCTCAAGGATTCCCAACTGCCCGATTCGCCCAGCGCCCGGCTCGACACCGAG 
TTGCTGCTGGCGGCGGCGATGGGCAAGCCGCGCAGCTTCCTGCGTACCTGGCCGGAGCGCATCGTGCCGCGC 
GAGGCCAACGAGCGGTTCGACGACTGGATCGCCCGTCGGCGCAACGGCGAACCGGTGGCCTACATCCTTGGC 
CACCAGGGCTTCTGGAGCCTGGACCTGGAGGTCGCGCCACACACACTGATCCCGCGCCCGGACACCGAACTG 
CTGGTGGAAACCGCGCTGGCGACCCTCGCGGCGGACACCGCTACGGTGCTCGACCTGGGCACCGGCACCGGC 
GCCATCGCCCTGGCCCTGGCCAGCGAGCGGCCGCTGTGGACAGTGACTGCGGTGGACCGTGTGGAAGAGGCC 
GTGGCGCTGGCCGAGCGCAATCGCCAGCGGCTGCTCCTGGAGAACGTCGAGGTGCGCCGCAGCCACTGGTTC 
TCCGCCCTCGATGGCCGGCGCTTCCGGATGATCGTCGGCAATCCGCCGTACATCCCTGCCAGCGACCCGCAC 
CTGAGCGAGGGCGACGTGCGTTTCGAGCCGAAGAGCGCGCTGGTCGCGGGTAGCGATGGCCTCGACGACATC 
CGCCAGATCGTCGCCCAGGCGCCGCGGCATTTGCTGGACGAAGGCTGGCTGCTGCTCGAGCACGGCTATGAT 
CAAGGGGCGGCGGTGCGCGAACTGCTCGGCGCCCGCGGCTTCGCCGGGGTACATACGTTGCGCGACCTCGGC 
GGCAACGAGCGGATCACACTCGGACAATGGGCATGCTGA