ViewGene
Locus Name:
GeneID:
Location:

GeneID:2798
TrivialName: PA14_24200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24200
PAO1 Ortholog Locus:PA3090
Sequence Length:858
Protein Length:285
Start: 2100182
Stop: 2099325
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06478.1|AE004733_5 (AE004733) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 277/285 (97%), Positives = 277/285 (97%)
Sequence:
GTGCAGCGCCACCAGCCGGCTGCCGCGAGCCACCGCGCCGCTCTCCACGGCCTCGCGCAGGGCGAGCAGCAG
TTTGCCGGTGTACAGCGGTTCGAGGGCGACGCCGCTGGCCGTCTCGAACTCGACGATGAACCGCGCCAACCT
CCCATCGAGACAGGCGAAACCGCCACGGCTGGCGTCCAGCAGGCGATAGCCGGTATCGGCCCAGCCCGCCTC
GGCAAGGGTCGCCGCGACCTGGGCGGCGACGCCGTGGTCCTCCGGCACCGCCAGCGCGCCCACCACGGGATG
CCGCCCAGCCTCGCCGAGCACCAGGCCGGCCAGTGTCGTACCGGTACCGGCGGCCACCCAGATCGCGTCGTA
ATCGTCCCAGCCGAGCGTCGGCAACTGGGTCGCTATGCGCTCCACCAGCCCGATGCAACCGCGCGCGCCCAG
CAGCCCGCCACCGCCCTCGGCGACCGGCAGCAAGCCTGGGTAACGTTCCCGCCAGGGAAGCCAGAAACCGGC
GGCATGCCGCTGGCGATAGCCGCCGTAGCCGAGCCAGTGCAGTTCCATGCCGAGACTGCGCAGGTCGCGCAC
CGTCGGCGTATCGACTTCGTGTCCGCGCAACAGGCCGACGCAACGGAAATCGAAACGCGCGCCGGCGCCGGC
CAGCGCGTGCAGGTGGTTGGAGTGGGCGCCGCCGAGGCTGATCAGGCCGTCCAGCCCCTGCTCGCGGGCCAG
CGCCAGGTGTGGCGCGAGCTTGAACCCCTTGTTGCCGGAGATCAACGGATCGGCCTGGTCCAGGCGCAGCAG
CGCCAGTTCGACCCCGGCCCGTTGCAGCCAGTCGAGTTCGAGACGCTGCAAGGGTGTATGCGGTGA
Translation:
MQRHQPAAASHRAALHGLAQGEQQFAGVQRFEGDAAGRLELDDEPRQPPIETGETATAGVQQAIAGIGPARL
GKGRRDLGGDAVVLRHRQRAHHGMPPSLAEHQAGQCRTGTGGHPDRVVIVPAERRQLGRYALHQPDATARAQ
QPATALGDRQQAWVTFPPGKPETGGMPLAIAAVAEPVQFHAETAQVAHRRRIDFVSAQQADATEIETRAGAG
QRVQVVGVGAAEADQAVQPLLAGQRQVWRELEPLVAGDQRIGLVQAQQRQFDPGPLQPVEFETLQGCMR*
AnnotationID:2806GeneID:2798
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 18:06:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3090
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14671




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22742




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2798
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4541
                           PA3090_tr
                           translation of PA3090
                           285
                           97.19
                           97.19
                           0
                           1434.0
     

     
     
130643
                           gb|AAG06478.1|AE004733_5
                           (AE004733) hypothetical protein PA3090 [Pseudomonas aeruginosa PAO1]
                           285
                           96.84
                           97.19
                           0
                           1431.0
     

     






      

          
GC ORFID: 45800How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3090Glimmer Score: 

          
Start: 2853749Stop: 2854606

          
Length: 858


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3090 translation of PA3090Homolog Bit Score 556.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCAGCGCCACCAGCCGGCTGCCGCGAGCCACCGCGCCGCTCTCCACGGCCTCGCGCAGGGCGAGCAGCAG 
TTTGCCGGTGTACAGCGGTTCGAGGGCGACGCCGCTGGCCGTCTCGAACTCGACGATGAACCGCGCCAACCT 
CCCATCGAGACAGGCGAAACCGCCACGGCTGGCGTCCAGCAGGCGATAGCCGGTATCGGCCCAGCCCGCCTC 
GGCAAGGGTCGCCGCGACCTGGGCGGCGACGCCGTGGTCCTCCGGCACCGCCAGCGCGCCCACCACGGGATG 
CCGCCCAGCCTCGCCGAGCACCAGGCCGGCCAGTGTCGTACCGGTACCGGCGGCCACCCAGATCGCGTCGTA 
ATCGTCCCAGCCGAGCGTCGGCAACTGGGTCGCTATGCGCTCCACCAGCCCGATGCAACCGCGCGCGCCCAG 
CAGCCCGCCACCGCCCTCGGCGACCGGCAGCAAGCCTGGGTAACGTTCCCGCCAGGGAAGCCAGAAACCGGC 
GGCATGCCGCTGGCGATAGCCGCCGTAGCCGAGCCAGTGCAGTTCCATGCCGAGACTGCGCAGGTCGCGCAC 
CGTCGGCGTATCGACTTCGTGTCCGCGCAACAGGCCGACGCAACGGAAATCGAAACGCGCGCCGGCGCCGGC 
CAGCGCGTGCAGGTGGTTGGAGTGGGCGCCGCCGAGGCTGATCAGGCCGTCCAGCCCCTGCTCGCGGGCCAG 
CGCCAGGTGTGGCGCGAGCTTGAACCCCTTGTTGCCGGAGATCAACGGATCGGCCTGGTCCAGGCGCAGCAG 
CGCCAGTTCGACCCCGGCCCGTTGCAGCCAGTCGAGTTCGAGACGCTGCAAGGGTGTATGCGGTGA