ViewGene
Locus Name:
GeneID:
Location:

GeneID:2795
TrivialName: PA14_49930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49930
PAO1 Ortholog Locus:PA1116
Sequence Length:840
Protein Length:279
Start: 4439375
Stop: 4438536
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04505.1|AE004542_1 (AE004542) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 279/279 (100%), Positives = 279/279 (100%)
Sequence:
ATGGCGGTCATCGGGCGTTTCAATTCACTGCAGGTGGTCAAACACACGGAGTTCGGGCTCTATCTCGACGGT
ACCCAGCACGGCGAGATCCTCCTGCCCAAGCGCTATGTGCCGAAGGACCAGCCCAGCGAAGTGGGCGACTGG
CTCAACGTGTTCATCTACCTGGACAGCGACGACCGCCTGATCGCCACCACCCAGACGCCCAAGGTCCAGGTC
GGCGGTTTCGCCAGCCTGAAGGTCGTGGAGATCAACCGGATCGGCCTGTTCCTCGACTGGGGCCTGCCCAAG
GACCTGCTGCTGCCGCATTCGGAAGAGAAGCGTCCGTTGCAGGTCGGCGACTACTGCGTGGTCTACGTCTAC
CTGGACAAGCGCACCAACCGCATCACCGCCACCGCGCGCCTGGACCGCCAGCTGGATAACCTGCCGCCGCGC
TACAGCGTCGGCCAGGCGGTCGACCTGCTGGTGGTGGAGCGTACCGAGATGGGCTTCAAGGCGATCATCGAG
GGCAAGCACTGGGGCCTGATCCACAAGAACGAGGCGTTCAAGTTCCTCCGCAGCGGCATGCGCGAACAGGGC
TACATCAAGGAATTGCGCGCGGACGGCAAGATCGCCCTGAGCCTGCAGCCGGTCGGCGCCGAGGCCGCCGTC
GAGCTGAGCCAGCAGATTCTCGCCCGGCTGCTGGAGGCCGGCGGCAGCCTGCCGCTCAGCGACAAGAGTTCG
CCGGAAGATATCCACCGGCTCTTCGGGGTCAGCAAGGGGACCTTCAAGAAGGCCATCGGCGGTCTCTACAAG
AAAGGCCTGATCCTGATCCACCCGGAACGCATCGAACTGCCGCGCTGA
Translation:
MAVIGRFNSLQVVKHTEFGLYLDGTQHGEILLPKRYVPKDQPSEVGDWLNVFIYLDSDDRLIATTQTPKVQV
GGFASLKVVEINRIGLFLDWGLPKDLLLPHSEEKRPLQVGDYCVVYVYLDKRTNRITATARLDRQLDNLPPR
YSVGQAVDLLVVERTEMGFKAIIEGKHWGLIHKNEAFKFLRSGMREQGYIKELRADGKIALSLQPVGAEAAV
ELSQQILARLLEAGGSLPLSDKSSPEDIHRLFGVSKGTFKKAIGGLYKKGLILIHPERIELPR*
AnnotationID:2803GeneID:2795
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 14:02:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1116
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2996, Uncharacterized protein conserved in bacteria [Function unknown]
             CD-Length = 287 residues,  99.7% aligned
             Score =  347 bits (892), Expect = 8e-97






   
Genomic Context:






   
Comment:


















    ReferenceID:5593




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22737




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2795
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4538
                           PA1116_tr
                           translation of PA1116
                           279
                           99.99
                           99.99
                           0
                           1434.0
     

     
     
130588
                           gb|AAG04505.1|AE004542_1
                           (AE004542) hypothetical protein PA1116 [Pseudomonas aeruginosa PAO1]
                           279
                           99.99
                           99.99
                           0
                           1434.0
     

     
     
130589
                           gb|AAO55113.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           279
                           73.11
                           84.58
                           1
                           1072.0
     

     
     
130590
                           gb|AAN70136.1|AE016653_7
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           279
                           69.17
                           81.00
                           1
                           999.0
     

     
     
130591
                           gb|AAO77612.1|
                           (AE016936) conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482]
                           281
                           50.53
                           70.46
                           4
                           707.0
     

     






      

          
GC ORFID: 45797How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1116Glimmer Score: 

          
Start: 514533Stop: 515372

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1116 translation of PA1116Homolog Bit Score 556.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6363 (ORF: BLASTX 420.0), t_PA1116 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGGTCATCGGGCGTTTCAATTCACTGCAGGTGGTCAAACACACGGAGTTCGGGCTCTATCTCGACGGT 
ACCCAGCACGGCGAGATCCTCCTGCCCAAGCGCTATGTGCCGAAGGACCAGCCCAGCGAAGTGGGCGACTGG 
CTCAACGTGTTCATCTACCTGGACAGCGACGACCGCCTGATCGCCACCACCCAGACGCCCAAGGTCCAGGTC 
GGCGGTTTCGCCAGCCTGAAGGTCGTGGAGATCAACCGGATCGGCCTGTTCCTCGACTGGGGCCTGCCCAAG 
GACCTGCTGCTGCCGCATTCGGAAGAGAAGCGTCCGTTGCAGGTCGGCGACTACTGCGTGGTCTACGTCTAC 
CTGGACAAGCGCACCAACCGCATCACCGCCACCGCGCGCCTGGACCGCCAGCTGGATAACCTGCCGCCGCGC 
TACAGCGTCGGCCAGGCGGTCGACCTGCTGGTGGTGGAGCGTACCGAGATGGGCTTCAAGGCGATCATCGAG 
GGCAAGCACTGGGGCCTGATCCACAAGAACGAGGCGTTCAAGTTCCTCCGCAGCGGCATGCGCGAACAGGGC 
TACATCAAGGAATTGCGCGCGGACGGCAAGATCGCCCTGAGCCTGCAGCCGGTCGGCGCCGAGGCCGCCGTC 
GAGCTGAGCCAGCAGATTCTCGCCCGGCTGCTGGAGGCCGGCGGCAGCCTGCCGCTCAGCGACAAGAGTTCG 
CCGGAAGATATCCACCGGCTCTTCGGGGTCAGCAAGGGGACCTTCAAGAAGGCCATCGGCGGTCTCTACAAG 
AAAGGCCTGATCCTGATCCACCCGGAACGCATCGAACTGCCGCGCTGA