ViewGene
Locus Name:
GeneID:
Location:

GeneID:2781
TrivialName: PA14_72650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72650
PAO1 Ortholog Locus:PA5506
Sequence Length:858
Protein Length:285
Start: 6471293
Stop: 6472150
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08891.1|AE004963_4 (AE004963) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 283/285 (99%), Positives = 284/285 (99%)
Sequence:
ATGCAAGAACTAAAACAACGCCTGGCCTCCCCGCCCGCCGAACTGACGCCCGCGGAGCGCAAGGTGGTGCGT
GCCCTGCTCGATGACTACCCGCGCCTCGGCCTCGGTCCGATGACGCGCCTGGCCCGGCACGCCGGAGTCAGC
GACCCGACGATCATGCGCCTGGTGAAAAAGCTCGGCTTCGCCGGCTACGGCGACTTCCAGGAAGCGCTGCTG
GCCGACGTCGACGACCGCCTGCGCTCGCCGCGCACCCTGCTCGCCGAACGCCGCGAGCGGATGGGCCGCGAC
GACACCTGGGCGCGCTACCTCGACCAGGCTGGCCAGAGCCTGCAACAGGCCCTCGGCCTGACCCGCCCCGAT
GACATCCAGCGCCTCGCCGACTGGCTGCTCGACAGCCGCCTGCGCGTGCACTGCCACGGCGGACGCTTCAGC
CGTTTCCTCGCCGGCTACCTAGTCACCCATCTGCGCCTGCTGCGCCCGCAATGCCGATTGCTCGACGACGGA
GCCCTGCTCCCCGACCAGCTCTACGACCTCGGCCGCCAGGACCTGCTGGTCCTGTTCGACTATCGCCGCTAC
CAGAGCCAGGCCCAGCACGTGGCCCAGGCCGCCAAGGCACGCGGCACGCGGCTGGTGCTGTTCACCGACATC
TACGCCTCGCCGCTGCGCGAACACGCCGACCTGATCGTCAGTTCGCCGGTGGAATCCGCCTCGCCCTTCGAC
TCGCTGGTGCCGGCCATGGCCCAGGTCGAGGCGCTGGTAGCGACCCTGGTGGCGCGCATGGGCGCGCCGCTC
GACGAACGCCTGGAGGGCATCGACCAGCTCCGCAACGCGTTCAGCAGTCATCTTCTGGAGGAATGA
Translation:
MQELKQRLASPPAELTPAERKVVRALLDDYPRLGLGPMTRLARHAGVSDPTIMRLVKKLGFAGYGDFQEALL
ADVDDRLRSPRTLLAERRERMGRDDTWARYLDQAGQSLQQALGLTRPDDIQRLADWLLDSRLRVHCHGGRFS
RFLAGYLVTHLRLLRPQCRLLDDGALLPDQLYDLGRQDLLVLFDYRRYQSQAQHVAQAAKARGTRLVLFTDI
YASPLREHADLIVSSPVESASPFDSLVPAMAQVEALVATLVARMGAPLDERLEGIDQLRNAFSSHLLEE*
AnnotationID:2789GeneID:2781
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:19
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA5506
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1737
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL43135.1| (AE009164) transcriptional regulator, RpiR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 292

 Score =  139 bits (350), Expect = 2e-32
 Identities = 84/271 (30%), Positives = 142/271 (52%), Gaps = 21/271 (7%)








 
Structural Features:
COG1737, RpiR, Transcriptional regulators [Transcription]
CD-Length = 281 residues,  98.9% aligned
Score =  185 bits (471), Expect = 5e-48
Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 8/282 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5565




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22709




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33240




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2781_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2781
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4524
                           PA5506_tr
                           translation of PA5506
                           285
                           99.29
                           99.64
                           0
                           1441.0
     

     
     
130348
                           gb|AAG08891.1|AE004963_4
                           (AE004963) hypothetical protein PA5506 [Pseudomonas aeruginosa PAO1]
                           285
                           99.29
                           99.64
                           0
                           1441.0
     

     






      

          
GC ORFID: 45783How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5506Glimmer Score: 

          
Start: 5734982Stop: 5735839

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5506 translation of PA5506Homolog Bit Score 559.0

          
Other Homologs:  t_PA5506 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGAACTAAAACAACGCCTGGCCTCCCCGCCCGCCGAACTGACGCCCGCGGAGCGCAAGGTGGTGCGT 
GCCCTGCTCGATGACTACCCGCGCCTCGGCCTCGGTCCGATGACGCGCCTGGCCCGGCACGCCGGAGTCAGC 
GACCCGACGATCATGCGCCTGGTGAAAAAGCTCGGCTTCGCCGGCTACGGCGACTTCCAGGAAGCGCTGCTG 
GCCGACGTCGACGACCGCCTGCGCTCGCCGCGCACCCTGCTCGCCGAACGCCGCGAGCGGATGGGCCGCGAC 
GACACCTGGGCGCGCTACCTCGACCAGGCTGGCCAGAGCCTGCAACAGGCCCTCGGCCTGACCCGCCCCGAT 
GACATCCAGCGCCTCGCCGACTGGCTGCTCGACAGCCGCCTGCGCGTGCACTGCCACGGCGGACGCTTCAGC 
CGTTTCCTCGCCGGCTACCTAGTCACCCATCTGCGCCTGCTGCGCCCGCAATGCCGATTGCTCGACGACGGA 
GCCCTGCTCCCCGACCAGCTCTACGACCTCGGCCGCCAGGACCTGCTGGTCCTGTTCGACTATCGCCGCTAC 
CAGAGCCAGGCCCAGCACGTGGCCCAGGCCGCCAAGGCACGCGGCACGCGGCTGGTGCTGTTCACCGACATC 
TACGCCTCGCCGCTGCGCGAACACGCCGACCTGATCGTCAGTTCGCCGGTGGAATCCGCCTCGCCCTTCGAC 
TCGCTGGTGCCGGCCATGGCCCAGGTCGAGGCGCTGGTAGCGACCCTGGTGGCGCGCATGGGCGCGCCGCTC 
GACGAACGCCTGGAGGGCATCGACCAGCTCCGCAACGCGTTCAGCAGTCATCTTCTGGAGGAATGA