ViewGene

Locus Name:
GeneID:
Location:

GeneID:2760
TrivialName: PA14_72050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72050
PAO1 Ortholog Locus:PA5459
Sequence Length:837
Protein Length:278
Start: 6423235
Stop: 6424071
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08844.1|AE004958_14 (AE004958) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 275/278 (98%), Positives = 276/278 (99%)
Sequence:
ATGCTGAACTTCCTCAAGAAGATCGTCTCGCCGCCCAGCCCCGCCGCCCAGCCCGTCGCCGCGCCACCCACC
CCCGCGCCGGTCGACCCGTACATGCTCGGGTTGCGCGACGCGGTGCTCAGCGGCTGGTTCAACCAGGAGACC
GACGAGCTGTTCAGCGGCTTTCCGATTTCCGCCGAGGACACCGTGCTCGACGTGGGGTGCGGCGACGGCGGC
AACGTTCATTTCTGCGCCATGCGCGGCGCTCGCATCATCATCGCCGACATCGACGCGGAAAAGATCGCCAGG
ACCCGCGAGCGCCTGGCCGATACCCCGGCCCGCGAACTGGAATGCCTGGTCAGCGACTGCGACCCGTTGCCC
CTGGCTGACGCCACGGCCACCCGGGTGGTCTCCACCGAGGTCATCGAGCACGTCGACGATCCGCGGCAGTTC
CTCGCCGAGCTGGTGCGGGTCGGCCAGCCCGGCGCACTCTATCTGCTCAGCGTGCCGCATCCCACGTCGGAA
GACCTGCAGAAAGACTTCGCCGCCGACGAATACTTCCGCAAGCCCAACCACATCCGCGTGCTCGGCGAGGAG
CAGTTCGCCGCACTGGTGCGCGAAGCCGGGCTGGAAATCCTCAGCCACAGCCGCTACGGCTTCTACTGGTCG
CTGTGGATGCTGCTGTTCTGGGAGGCCAAGGTCGATTTCGGCAATCCCGACCATCCCCTCCTCGAACACTGG
GCCAGGACCTGGCAGGCGCTGCTCGACTCGCCGCGCGGTCCGGCCATCAAGCAGGCCCTGGACGCCGTGGTC
GCCAAGAGCCAGGTGATCATCGCGCGCAAGCCCGCCCAGGCGTAG
Translation:
MLNFLKKIVSPPSPAAQPVAAPPTPAPVDPYMLGLRDAVLSGWFNQETDELFSGFPISAEDTVLDVGCGDGG
NVHFCAMRGARIIIADIDAEKIARTRERLADTPARELECLVSDCDPLPLADATATRVVSTEVIEHVDDPRQF
LAELVRVGQPGALYLLSVPHPTSEDLQKDFAADEYFRKPNHIRVLGEEQFAALVREAGLEILSHSRYGFYWS
LWMLLFWEAKVDFGNPDHPLLEHWARTWQALLDSPRGPAIKQALDAVVAKSQVIIARKPAQA*
AnnotationID:2768GeneID:2760
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5459
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:5523
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22667
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34636
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2760_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2760

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4495 PA5459_tr translation of PA5459 278 98.92 99.28 0 1448.0
129933 gb|AAG08844.1|AE004958_14 (AE004958) hypothetical protein PA5459 [Pseudomonas aeruginosa PAO1] 278 98.92 99.28 0 1448.0
4496 PA5457_tr translation of PA5457 296 43.58 58.10 27 616.0
129934 gb|AAG08842.1|AE004958_12 (AE004958) hypothetical protein PA5457 [Pseudomonas aeruginosa PAO1] 296 43.58 58.10 27 616.0
GC ORFID: 45762How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5459Glimmer Score:
Start: 5686924Stop: 5687760
Length: 837
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5459 translation of PA5459Homolog Bit Score 562.0
Other Homologs: t_PA5459 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGAACTTCCTCAAGAAGATCGTCTCGCCGCCCAGCCCCGCCGCCCAGCCCGTCGCCGCGCCACCCACC
CCCGCGCCGGTCGACCCGTACATGCTCGGGTTGCGCGACGCGGTGCTCAGCGGCTGGTTCAACCAGGAGACC
GACGAGCTGTTCAGCGGCTTTCCGATTTCCGCCGAGGACACCGTGCTCGACGTGGGGTGCGGCGACGGCGGC
AACGTTCATTTCTGCGCCATGCGCGGCGCTCGCATCATCATCGCCGACATCGACGCGGAAAAGATCGCCAGG
ACCCGCGAGCGCCTGGCCGATACCCCGGCCCGCGAACTGGAATGCCTGGTCAGCGACTGCGACCCGTTGCCC
CTGGCTGACGCCACGGCCACCCGGGTGGTCTCCACCGAGGTCATCGAGCACGTCGACGATCCGCGGCAGTTC
CTCGCCGAGCTGGTGCGGGTCGGCCAGCCCGGCGCACTCTATCTGCTCAGCGTGCCGCATCCCACGTCGGAA
GACCTGCAGAAAGACTTCGCCGCCGACGAATACTTCCGCAAGCCCAACCACATCCGCGTGCTCGGCGAGGAG
CAGTTCGCCGCACTGGTGCGCGAAGCCGGGCTGGAAATCCTCAGCCACAGCCGCTACGGCTTCTACTGGTCG
CTGTGGATGCTGCTGTTCTGGGAGGCCAAGGTCGATTTCGGCAATCCCGACCATCCCCTCCTCGAACACTGG
GCCAGGACCTGGCAGGCGCTGCTCGACTCGCCGCGCGGTCCGGCCATCAAGCAGGCCCTGGACGCCGTGGTC
GCCAAGAGCCAGGTGATCATCGCGCGCAAGCCCGCCCAGGCGTAG