ViewGene
Locus Name:
GeneID:
Location:

GeneID:2751
TrivialName: PA14_11340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11340
PAO1 Ortholog Locus:PA4061
Sequence Length:870
Protein Length:289
Start: 986587
Stop: 985718
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07448.1|AE004822_8 (AE004822) probable thioredoxin [Pseudomonas aeruginosa PAO1]
Identities = 286/289 (98%), Positives = 287/289 (99%)
Sequence:
ATGAGCGATACGCCCTACATCTTCGACGTCACCGGCGCCAACTTCGAGCAGTTGGTCATCGAGAACTCGTTC
CACAAGCCGGTCCTGGTGGACTTCTGGGCCGACTGGTGCGCCCCGTGCAAGGCGCTGATGCCGCTGCTGGCG
CAGATCGCCGAGTCCTACCAGGGCGAATTGCTGCTGGCCAAGGTCAACTGCGACGTCGAGCAGGACATCGTG
ATGCGCTTCGGCATCCGCAGCCTGCCGACCGTGGTCCTGTTCAAGGATGGCCAGCCGGTCGACGGTTTCGCC
GGTGCCCAGCCCGAATCGCAGATCCGCGCCCTGCTCGAACCCCATGTGAAAGCACCGGCGCTGCCCGACGAA
GACCCGCTGGAAGTGGCCCAGGCGCTGTTCGCCGAAGGCCGCATCGGCGACGCCGAAGCGACCCTGAAAGCC
CTGCTGGCGGAGAACAACGACAACCCCGCGGCGCTGATCCTCTACGCCCGCTGCCTGGCCGAGCGCGGCGAA
CTGGAAGAGGCGCAGGCCATCCTCGACGCGGTGAAGAGCGACGAGCACAAGCAGGCCCTGGCCGGCGCCCGC
GCGCAACTGACCTTCCTGCGCCAGGCTGCCGACCTGCCCGACAGTGCAGAACTGAAGAGCCGTCTGGCCGCC
GATGCCGGCGACGACGAGGCGGCCTACCAGTTGGCCGTCCAGCAGCTCGCCCGGCAGCAGTACGAGGCGGCT
CTGGACGGACTGCTCAAGCTGTTCCTGCGCAACCGCGGCTACCAGGACGACCTGCCGCGCAAGACCCTGGTG
CAGGTCTTCGACCTGCTCGGCAACGACCATCCGCTGGTCACCACCTACCGCCGCAAGCTGTACCAGGCGCTC
TACTGA
Translation:
MSDTPYIFDVTGANFEQLVIENSFHKPVLVDFWADWCAPCKALMPLLAQIAESYQGELLLAKVNCDVEQDIV
MRFGIRSLPTVVLFKDGQPVDGFAGAQPESQIRALLEPHVKAPALPDEDPLEVAQALFAEGRIGDAEATLKA
LLAENNDNPAALILYARCLAERGELEEAQAILDAVKSDEHKQALAGARAQLTFLRQAADLPDSAELKSRLAA
DAGDDEAAYQLAVQQLARQQYEAALDGLLKLFLRNRGYQDDLPRKTLVQVFDLLGNDHPLVTTYRRKLYQAL
Y*
AnnotationID:2759GeneID:2751
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:30
Gene Name:
Confidence Code:3
GeneProduct:putative thioredoxin
Cell Localization:()
Synonyms:trx-1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3118,pfam00085
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66138.1|AE016242_6 (AE016775) thioredoxin [Pseudomonas putida KT2440]
          Length = 290

 Score =  445 bits (1144), Expect = e-124
 Identities = 220/287 (76%), Positives = 248/287 (86%)

>gb|AAO54228.1| (AE016858) thioredoxin [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 290

 Score =  434 bits (1115), Expect = e-121
 Identities = 217/287 (75%), Positives = 241/287 (83%)

>gb|AAM41894.1| (AE012374) thioredoxin [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 285

 Score =  196 bits (497), Expect = 2e-49
 Identities = 115/290 (39%), Positives = 162/290 (55%), Gaps = 6/290 (2%)






 
Structural Features:
COG3118, COG3118, Thioredoxin domain-containing protein 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 304 residues,  94.1% aligned
Score =  304 bits (781), Expect = 5e-84
Identities = 139/289 (48%), Positives = 177/289 (61%), Gaps = 3/289 (1%)

pfam00085, Thioredoxin.
CD-Length = 108 residues,  93.5% aligned
Score =  116 bits (292), Expect = 3e-27
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 2/103 (1%)






   
Genomic Context:






   
Comment:
other possible gene name: ybbA


















    ReferenceID:5505




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22649




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36814




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2751_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2751
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4485
                           PA4061_tr
                           translation of PA4061
                           289
                           98.96
                           99.30
                           0
                           1453.0
     

     
     
129862
                           gb|AAG07448.1|AE004822_8
                           (AE004822) probable thioredoxin [Pseudomonas aeruginosa PAO1]
                           289
                           98.96
                           99.30
                           0
                           1453.0
     

     
     
129863
                           gb|AAN66138.1|AE016242_6
                           (AE016775) thioredoxin [Pseudomonas putida KT2440]
                           290
                           75.86
                           85.51
                           1
                           1143.0
     

     
     
129864
                           gb|AAO54228.1|
                           (AE016858) thioredoxin [Pseudomonas syringae pv. tomato str. DC3000]
                           290
                           74.82
                           83.10
                           1
                           1114.0
     

     
     
129871
                           emb|CAE50896.1|
                           (BX248361) thioredoxin [Corynebacterium diphtheriae]
                           289
                           17.64
                           25.25
                           182
                           248.0
     

     






      

          
GC ORFID: 45753How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4061Glimmer Score: 

          
Start: 3967350Stop: 3968219

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4061 translation of PA4061Homolog Bit Score 564.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1329 (ORF: BLASTX 218.0), t_PA4061 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATACGCCCTACATCTTCGACGTCACCGGCGCCAACTTCGAGCAGTTGGTCATCGAGAACTCGTTC 
CACAAGCCGGTCCTGGTGGACTTCTGGGCCGACTGGTGCGCCCCGTGCAAGGCGCTGATGCCGCTGCTGGCG 
CAGATCGCCGAGTCCTACCAGGGCGAATTGCTGCTGGCCAAGGTCAACTGCGACGTCGAGCAGGACATCGTG 
ATGCGCTTCGGCATCCGCAGCCTGCCGACCGTGGTCCTGTTCAAGGATGGCCAGCCGGTCGACGGTTTCGCC 
GGTGCCCAGCCCGAATCGCAGATCCGCGCCCTGCTCGAACCCCATGTGAAAGCACCGGCGCTGCCCGACGAA 
GACCCGCTGGAAGTGGCCCAGGCGCTGTTCGCCGAAGGCCGCATCGGCGACGCCGAAGCGACCCTGAAAGCC 
CTGCTGGCGGAGAACAACGACAACCCCGCGGCGCTGATCCTCTACGCCCGCTGCCTGGCCGAGCGCGGCGAA 
CTGGAAGAGGCGCAGGCCATCCTCGACGCGGTGAAGAGCGACGAGCACAAGCAGGCCCTGGCCGGCGCCCGC 
GCGCAACTGACCTTCCTGCGCCAGGCTGCCGACCTGCCCGACAGTGCAGAACTGAAGAGCCGTCTGGCCGCC 
GATGCCGGCGACGACGAGGCGGCCTACCAGTTGGCCGTCCAGCAGCTCGCCCGGCAGCAGTACGAGGCGGCT 
CTGGACGGACTGCTCAAGCTGTTCCTGCGCAACCGCGGCTACCAGGACGACCTGCCGCGCAAGACCCTGGTG 
CAGGTCTTCGACCTGCTCGGCAACGACCATCCGCTGGTCACCACCTACCGCCGCAAGCTGTACCAGGCGCTC 
TACTGA